Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01729 ATGAAACTGAGTCCAAGAGAGATCGAGAAACTAGAACTACACAATGCTGGCTACCTTGCCCAGAAACGCCTAGCTCGTGGTTTAAGACTCAATTATACTGAAGCGGTGGCTCTCATAGCTTCACAGATTTTGGAATTTGTTCGTAATGGTGATAAGACTGTTGCAGAACTAATGTCCATTGGGAAACAACTTTTAGGAAGGAGGCAAGTTCTTCCAGCTGTTCCACATCTCTTGGATTCTGTTCAGGTTGAAGCTACCTTTTGTGATGGGACTAAATTGGTCACAGTTCATGACCCAATAGCTTGTGATAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCTCTTGACATGTTTGCCGAGAACGGAGATAAAATAATTCCAGGTGAAATAATAACTGGAGATGGAAACCTGATTCTTAACCCTGGAAGGGATGCAGTAAATCTCACAGTTGCCAACAAAGGAGACAGGCCAATTCAGGTTGGAAGCCACTACCATTTTATTGAAGTCAATCCCTTTTTAACCTTTGATCGAAGGAAAGCATTTGGCAAGCGCCTCAATATAGCTGCTGGGACTTGCACACGCTTTGAGCCAGGGGAAAGTAAAAGTGTTGTGCTTGTAAGCATTGGAGGTAACAAAGTCATCAAAGGAGGTAACAACATAGTTGATGGTCCAGTTAATGATTCTAATTGCATAGCAGCCATGGAGGCTGTGAGCACAAGGGGATTTGGGCATATAGAAGAGGCAAATGCAAGGGAAGGTATTACTGGAGAAGACTATTCACTCACTACAGTAATTCCTCGAGAAGACTATGCCAACAAGTATGGCCCCACTACTGGTGACAAAATCCGTCTTGGTGACACTGACTTGTTTGCAGAAATTGAAAAAGATTTTGCAGTCTATGGTGATGAGTGTGTTTTTGGAGGTGGGAAAGTCATAAGAGATGGAATGGGTCAGTCATGTGGCCATCCACCTGATGGCTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATACTGGAATTATCAAAGCAGATATTGGTATTAAAGATGGCCTTATTGTCTCAATTGGAAAATCAGGAAATCCAGACATTATGAATGGTGTATTTATTGATATGATCATTGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTGATTGTAACAGCTGGGGCCATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTATATGAAGCCATATCAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGACCAGCTGAAGGAACACGTGCTACAACTTGTACACCAGCACCAATTCAGATGAAACTGATGCTGCAATCAACAGATGAGCTGCCTCTAAACTTTGGTTTTACTGGAAAAGGAAATTGTGCCGAGCCTGATGAACTACATGAAATAGTCAAGGCTGGAGCTATGGGACTGAAGCTGCATGAAGACTGGGGAACTACACCAGCAGCAATAGACAATTGTTTGACTGTCGCAGAACAATATGATATCCAGGTTAATATACATACTGACACCTTAAATGAATCTGGATTTGTGGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGAGGTCATGCTCCAGATATTATCAAAGTATGTGGTGTGAAGAATGTCCTACCTTCATCAACAAATCCTACACGTCCTTTTACATCTAATACCATAGACGAGCATCTTGACATGTTGATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCAGAATCAAGGATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTGCATGATATGGGAGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGTAGGACTTGGCAAACTGCCAATAAGATGAAGTCACAAAGAGGACCACTGCAGCCCAGTGAATCAGACAATGACAACTTTCGGATCAAACGTTATGTTGCAAAGTACACTATCAATCCAGCTATAGCCAATGGTTTGTCACGATATATTGGTTCAGTTGAGGTGGGAAAGTTAGCTGATCTTGTATTATGGAACCCGGCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATGGGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGGTAATCATGAGGCCTATGTTCGGAGCATTGGGCAAGGCTGGTTGTGCGAACTCCATTACTTTTGTGAGCCAGGCAGCTTTGGATGAAGGGGTTAAAGATTCGTACGGACTTAACAAGAGGGTGGAAGCAGTGGAAAATGTGAGGAAGCTCACCAAACAAGACATGAAACTGAATGACGCCCTTCCAGAAATCACTGTGGACCCAGAAACATACACAGTCACTGCTGATGGAGAGGTTCTCACCTGCACTGCAGCCACTACTGTTCCTCTTTCTCGAAATTACTTCCTCTTTTAA 2514 0.422 MKLSPREIEKLELHNAGYLAQKRLARGLRLNYTEAVALIASQILEFVRNGDKTVAELMSIGKQLLGRRQVLPAVPHLLDSVQVEATFCDGTKLVTVHDPIACDNGNLELALFGSFLPVPSLDMFAENGDKIIPGEIITGDGNLILNPGRDAVNLTVANKGDRPIQVGSHYHFIEVNPFLTFDRRKAFGKRLNIAAGTCTRFEPGESKSVVLVSIGGNKVIKGGNNIVDGPVNDSNCIAAMEAVSTRGFGHIEEANAREGITGEDYSLTTVIPREDYANKYGPTTGDKIRLGDTDLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSCGHPPDGSLDTVITNAVIIDYTGIIKADIGIKDGLIVSIGKSGNPDIMNGVFIDMIIGANTEVIAGEGLIVTAGAIDCHVHFICPQLVYEAISSGITTLVGGGTGPAEGTRATTCTPAPIQMKLMLQSTDELPLNFGFTGKGNCAEPDELHEIVKAGAMGLKLHEDWGTTPAAIDNCLTVAEQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLNKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTANKMKSQRGPLQPSESDNDNFRIKRYVAKYTINPAIANGLSRYIGSVEVGKLADLVLWNPAFFGAKPEMVIKGGEVAWANMGDPNASIPTPEPVIMRPMFGALGKAGCANSITFVSQAALDEGVKDSYGLNKRVEAVENVRKLTKQDMKLNDALPEITVDPETYTVTADGEVLTCTAATTVPLSRNYFLF. 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01729 837 FunFam Urease subunit alpha 4 124 - -
Seca6g01729 837 Pfam Amidohydrolase family 395 720 IPR006680 GO:0016787
Seca6g01729 837 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 447 IPR011059 GO:0016810
Seca6g01729 837 Hamap Urease subunit alpha [ureC]. 269 837 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 CDD Urease_beta 131 231 IPR002019 GO:0035550|GO:0043419
Seca6g01729 837 PIRSF Urease 1 837 IPR008221 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 NCBIfam urease subunit gamma 1 101 IPR002026 GO:0016151|GO:0043419
Seca6g01729 837 ProSitePatterns Urease nickel ligands signature. 397 410 IPR029754 GO:0016151
Seca6g01729 837 SUPERFAMILY Composite domain of metallo-dependent hydrolases 679 749 IPR011059 GO:0016810
Seca6g01729 837 ProSitePatterns Urease active site. 587 603 IPR017950 GO:0009039
Seca6g01729 837 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Seca6g01729 837 Pfam Urease alpha-subunit, N-terminal domain 271 389 IPR011612 -
Seca6g01729 837 NCBIfam urease subunit alpha 271 837 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 Gene3D Urease, beta subunit 131 261 IPR036461 -
Seca6g01729 837 ProSiteProfiles Urease domain profile. 399 837 IPR017951 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Seca6g01729 837 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Seca6g01729 837 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Seca6g01729 837 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550|GO:0043419
Seca6g01729 837 NCBIfam urease subunit beta 131 232 IPR002019 GO:0035550|GO:0043419
Seca6g01729 837 Gene3D Urease, subunit C, domain 1 271 750 IPR011059 GO:0016810
Seca6g01729 837 SUPERFAMILY Urease, beta-subunit 131 260 IPR036461 -
Seca6g01729 837 SUPERFAMILY Metallo-dependent hydrolases 399 837 IPR032466 -
Seca6g01729 837 PRINTS Urea amidohydrolase (urease) protein signature 565 582 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 PRINTS Urea amidohydrolase (urease) protein signature 604 620 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 PRINTS Urea amidohydrolase (urease) protein signature 671 686 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 PRINTS Urea amidohydrolase (urease) protein signature 697 710 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Seca6g01729 837 PANTHER UREASE 1 837 - -
Seca6g01729 837 CDD Urease_alpha 271 836 IPR005848 GO:0006807|GO:0009039|GO:0016151
Seca6g01729 837 SUPERFAMILY Urease, gamma-subunit 1 105 IPR036463 GO:0016151|GO:0043419
Seca6g01729 837 Gene3D - 399 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01729 Seca-Chr6 71976379 71985055 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01729 K01427 - gmx:547672 1483.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01729 6 71976379 71985055 Seca6g01729 6 71976379 71985055 ECH