Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03356 ATGGTTCAAGTGATGCTGAAATCAGAAAGATCGCCCTATAGCAACCTTCCGATAATTCGAATACCAGGTGATGGTAGATGTATGTTTAGATCAGTGGTCTATGGTGCCTGCCTCAGAACAGGAGACCCACCTCCAAGTCTCACCAAGCAAAAAGAACTTGCAGATGAACTCAGAGCTAAAGTTGTGGATGAATTCATCAAGAGGAGAAGAGACACTGAATGGTTTCTTGAGGGTGACTTTAACACCTATACAATGCAAATGAGAAAGTCTCAAGTATGGGGAGGAGAGCCTGAACTTCTCATGTCATCACATGTTTTACAGATGCCTATAACAGTGGTGATGCAGGATATGAAATCCAATAACCTTAAAATTATAGCCGAATATGGCCAAGAGTATGGAAAGGAGAAGCCTATTAGAGTTATATATGATGGTTATGGGCACTATGATGTATTGAAATGTTCAACATGA 468 0.406 MVQVMLKSERSPYSNLPIIRIPGDGRCMFRSVVYGACLRTGDPPPSLTKQKELADELRAKVVDEFIKRRRDTEWFLEGDFNTYTMQMRKSQVWGGEPELLMSSHVLQMPITVVMQDMKSNNLKIIAEYGQEYGKEKPIRVIYDGYGHYDVLKCST 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03356 155 FunFam OTU domain-containing protein 2 155 - -
Vivi3g03356 155 Pfam OTU-like cysteine protease 22 144 IPR003323 -
Vivi3g03356 155 SUPERFAMILY Cysteine proteinases 15 151 IPR038765 -
Vivi3g03356 155 Gene3D - 3 155 - -
Vivi3g03356 155 CDD OTU_plant_OTU4-like 15 151 - -
Vivi3g03356 155 ProSiteProfiles OTU domain profile. 16 154 IPR003323 -
Vivi3g03356 155 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 19 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03356 Vivi-Chr3 56610331 56611762 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03356 K18342 - gmx:100792132 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03356 3 56610331 56611762 Vivi3g03356 3 56610331 56611762 ECH