Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2820 ATGAAACTGTGTCAAAGAGAAATTGAAAAACTACAGCTGCACAATGCTGGTTTTCTTGCTCAGAAACGTCTCGCTCGTGGTTTGAAACTCAACTACCCTGAAGCCGTTGCTCTCATAGCAACACAGATTGTGGAGTTTGTTCGTAATGGGGATAAGACTGTTTCAGAGCTAATGTCTATTGGGAGAGAACTATTAGGAAGGAGACAAGTTCTTTCAGCTGTTCCACATCTCTTGGAAACTGTTCAGGTTGAAGCTACCTTTCATGATGGGACTAAGTTAATCACGGTTCATGACCCAATTGCTCGTGAAAATGGAAACCTTGTACTTGCATTATTCGGTTCTTTTCTTCCAGTACCTTCACTTGATATATTTACCGAGAACAATGAAGATAATGTCATTCCTGGTGAAATAAAAACTGAAGATAGAATGGTGATTCTTAATGCTGGAAGGGAAGCAGTCTCTCTTAAAGTTGTAAACAATGGAGACAGACCAGTTCAGGTTGGAAGCCACTATCATTTTATTGAAGTAAATCCTTACTTAACCTTTGATAGAAGAAAAGCATTTGGCAAGCGTCTTAATATAGCCTCTGGGACTACGACGCGCTTTGAGCCAGGGGAGAGTAAAAGTGTTATACTTGTAAGCATTGGTGGTAACAAAGTCATCCAAGGAGGTCACAACATTGTTTGTGGTCCAGTTAACGATTCCAAATGCATAGCAGCCATGGAGGCTGTGAGAACAAGGGGATTCAAGCATAAGGAAGATGAAAATGCAAGGGAAGGTATTACCGGAGAAGACTATTCATTAACTAAATTAATTCCTCGAGAGGAATATGCTAACAAGTATGGTCCCACTATTGGCGACAAAATTCGTCTTGGTGACACTAACTTGTTTGCGGAAATTGAAAAAGATTTTGCTGCCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTCATAAGAGATGGAATGGGTCAGTCGTGTGGCCATTCACCTGATGGCTCCTTCGATACCGTTATAACAAATGCTGTGGTCGTTGATTATACTGGAATTTTCAAAGCAGATATTGGCATTAAAGATGGCCTTATTGCCTCAATTGGAAAAGCAGGAAATCCAGATGTTATGCACGGTGTTAATATGATCTTTGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTGATTGTAACAGCTGGGGCTATAGATTGCCATGTGCATTTTATATGCCCTCAATTAGTATATGAAGCCGTATCAAGTGGGATCACTACACTAGTGGGAGGAGGAACAGGACCAGCAGATGGAACGCGTGCTACAACTTGCACACCGGCACCTAATCAGATGCAAATGATGCTGCAATCAACAGATGACCTGCCTCTGAACTTTGGTTTTAATGGAAAAGGGAATTGCGCCAAGCCTGATGAATTACATGAAATAGTCAAGGCTGGAGCTATGGGACTGAAGCTGCATGAGGATTGGGGAACTACACCAGCCACAATACACAACTGTTTGACTGTTGCAGAACAATATGATATCCAGGTTAACATACATACTGACACCTTAAATGAATCTGGATTTGTGGAACATACAATTGCTGCATTTGAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGCGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAGAATGTCCTACCCTCATCAACAAATCCTACAAGTCCTTTTACATTAAACACCATAGATGAGCATCTTGACATGTTGATGGTCTGCCATCATCTTGATAAGAATTGTCCAGAAGATGTTGCATTTGCAGAATCAAGGATAAGAGCCGAGACGATTGCTGCTGAAGATATTTTGCATGATATGGGTGCAATTAGCATTATTGCTTCTGATTCGCAGGCTATGGGTAGAATTGGAGAGGTCATAAGCAGAACTTGGCAAACTGCCAATAAGATGAAGTCACAAAGAGGACCACTGCAGCCTGATGATTCAGACAATGACAACTTTCGAATCAAACGTTATGTTGCAAAGTACACTATAAATCCTGCTATAGCGAATGGTTTGTCACGATATATTGGTTCAGTTGAGGTGGGAAAGTTAGCTGATCTTGTATTATGGAAACCGTCCTTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGACATTGCATGGGCTAACATGGGTGATGCAAACGCTAGCATCCCGACACCTGAACCGGTGATTATGAGACCTATGTTCGGAGCATTTGGCAAGGCTGGTCGTGCAAACTCTATTGCTTTTGTGAGCAAGGCAGCTTTGGACTACGGTGTAAAAGCTTTATATGGACTTGACAAGAGGGTGGAAGCCGTGGACAATGTAAGGAAGCTCAGCAAATTAGACATGAAACTGAATGATGCCCTTCCAGAAATCACTGTGGACCCAGAGACATACACTGTCACCGCAGATGGAGAGGTTCTAACCTGCGCTGCAGCCACCACTGTTCCACTTTCTAGAAATTACTTCCTCTTCTAA 2511 0.4221 MKLCQREIEKLQLHNAGFLAQKRLARGLKLNYPEAVALIATQIVEFVRNGDKTVSELMSIGRELLGRRQVLSAVPHLLETVQVEATFHDGTKLITVHDPIARENGNLVLALFGSFLPVPSLDIFTENNEDNVIPGEIKTEDRMVILNAGREAVSLKVVNNGDRPVQVGSHYHFIEVNPYLTFDRRKAFGKRLNIASGTTTRFEPGESKSVILVSIGGNKVIQGGHNIVCGPVNDSKCIAAMEAVRTRGFKHKEDENAREGITGEDYSLTKLIPREEYANKYGPTIGDKIRLGDTNLFAEIEKDFAAYGDECVFGGGKVIRDGMGQSCGHSPDGSFDTVITNAVVVDYTGIFKADIGIKDGLIASIGKAGNPDVMHGVNMIFGANTEVIAGEGLIVTAGAIDCHVHFICPQLVYEAVSSGITTLVGGGTGPADGTRATTCTPAPNQMQMMLQSTDDLPLNFGFNGKGNCAKPDELHEIVKAGAMGLKLHEDWGTTPATIHNCLTVAEQYDIQVNIHTDTLNESGFVEHTIAAFEGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTSPFTLNTIDEHLDMLMVCHHLDKNCPEDVAFAESRIRAETIAAEDILHDMGAISIIASDSQAMGRIGEVISRTWQTANKMKSQRGPLQPDDSDNDNFRIKRYVAKYTINPAIANGLSRYIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGDIAWANMGDANASIPTPEPVIMRPMFGAFGKAGRANSIAFVSKAALDYGVKALYGLDKRVEAVDNVRKLSKLDMKLNDALPEITVDPETYTVTADGEVLTCAAATTVPLSRNYFLF* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2820 836 CDD Urease_gamma 5 100 IPR002026 GO:0016151|GO:0043419
Mtr3g2820 836 Pfam Amidohydrolase family 394 719 IPR006680 GO:0016787
Mtr3g2820 836 PANTHER UREASE 1 836 - -
Mtr3g2820 836 ProSitePatterns Urease nickel ligands signature. 396 409 IPR029754 GO:0016151
Mtr3g2820 836 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Mtr3g2820 836 Pfam Urease alpha-subunit, N-terminal domain 272 388 IPR011612 -
Mtr3g2820 836 PIRSF Urease 1 836 IPR008221 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 CDD Urease_alpha 272 835 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 TIGRFAM urease_alph: urease, alpha subunit 272 836 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 Pfam Urease subunit beta-alpha linker domain 232 265 IPR040881 -
Mtr3g2820 836 Gene3D Urease, subunit C, domain 1 272 749 IPR011059 GO:0016810
Mtr3g2820 836 TIGRFAM urease_gam: urease, gamma subunit 1 101 IPR002026 GO:0016151|GO:0043419
Mtr3g2820 836 PRINTS Urea amidohydrolase (urease) protein signature 564 581 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 PRINTS Urea amidohydrolase (urease) protein signature 603 619 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 PRINTS Urea amidohydrolase (urease) protein signature 670 685 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 PRINTS Urea amidohydrolase (urease) protein signature 696 709 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 ProSiteProfiles Urease domain profile. 398 836 IPR017951 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Mtr3g2820 836 SUPERFAMILY Urease, beta-subunit 132 261 IPR036461 -
Mtr3g2820 836 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Mtr3g2820 836 Hamap Urease subunit alpha [ureC]. 270 836 IPR005848 GO:0006807|GO:0009039|GO:0016151
Mtr3g2820 836 Gene3D Urease, beta subunit 132 262 IPR036461 -
Mtr3g2820 836 SUPERFAMILY Metallo-dependent hydrolases 398 836 IPR032466 -
Mtr3g2820 836 Gene3D - 398 836 - -
Mtr3g2820 836 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Mtr3g2820 836 Pfam Urease beta subunit 134 230 IPR002019 GO:0035550|GO:0043419
Mtr3g2820 836 CDD Urease_beta 132 232 IPR002019 GO:0035550|GO:0043419
Mtr3g2820 836 SUPERFAMILY Composite domain of metallo-dependent hydrolases 694 746 IPR011059 GO:0016810
Mtr3g2820 836 SUPERFAMILY Composite domain of metallo-dependent hydrolases 271 446 IPR011059 GO:0016810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2820 K01427 - gmx:547672 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2820 3 42171096 42178668 Mtr3g2820 3 42171096 42178668 ECH