Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03345 ATGATCAATTCTGGTTCAGCATTGAGGAAACAGGTTTTTCCAATTGATTTCGAAACTGAAATGTCACAGCTTCTTGTAGATGCTGCTCATCACGGTCACACAGATACTGCTATGGAATGTCTAGCCAATTCATCAGTGGATGTTAACTTTATTGGAACCACAATGTTGAAGTCCAAAACTACTGAGATTTCGCTTCATGATGAATCGCCTCATCGAGTTAACTCCGTGTATGAAGAATTCAAAACTGAAGTTACTGCTCTGTTTTTGGCTGCACATTCAGGAAACTTGACTCTCGTTCGTAAACTAATGAATGTGGGAGCTAATGTGAATGTGAGATTGTTCCGTGGCTATGCGACAACCGCAGCGGTGAGGGAAGGTCACCTTAATGTATTGGAGGTTCTTATCAATGGTGGAGCTTCACAGCTTGCATGTGAAGAGGCTTTACTCGAATCAAGCTATGTCGGACGGGCTAGATTTGCTGAGGTGCTTATGCAGTCCAATATGATCCGTCCTCACGTTGCAGTTCACGCACTTGTCTCGGCTTGTTGCAGAGGATTCGTTGAGGTTGTTGATGTACTCATCAAGCAAGGAGTAGATATCAATGCAATCGATAGGATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCCGGCAGATAAATGTTGTTAAACTACTGTTGGAAGTTGGTGTAAGACTTGATATCAAGGTGAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTTCGCGTTGGTGTCGGACTAGCCGAGCCTTATCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCACCACCTCTCACCTAATACTTTTCACATTGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAACGTACTTCTGAATAATGGGGTTGATACAGAATTAGCACTTCAAACTACTGAAGAAACCAATCTACACCCTATTCACATGGCTGCCCGCCTTGGATTATACAACATTCTTCAATGTTTGATTAATGGTAACTGTAATTTGGACTCACAAACAAAATTTGGTGACACGGCCTTACTGATTTGTACAAGGTATAAACATGAGAAGTGTTTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCATTCGGTCATTGTGCAACTTCAACAGCAATTTCTACTCACTGGAAAGAATATCAGAAAGCAGTTCTGGATATAATTAGAGCCGGAAAGTTTATTAAATCTAGCAATGCGTCTAGATTTTCAGCTTTGTTATTTGCCACTCGCGCGAACGACATAGATGCTTTGAAAAAACTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAATGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAACGTGGAGGCTTTCAAGTTGCTTCTTCATGCAGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTTGATATCATAGATTTGAAACAAAATGGTGAAAATGTTCATAAGGTGATGTTTGAATATGCATTTAAAAAGGGATGTTTGAGTATTAGTACTTTAGCCGAGGCGAATCCTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAGCTACTAAAAGAAAGGAATTATGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCTAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAGGTAACAGGAAAGGAAATGATGCAGAGAATGTGATAATGGATGAGTTAGCTAGAAGAGTAGTATTGTGCGGCGTGCGCGTGAAGAAACATACAAAGTGTGGCAAAGGGTTGCCACATAAGAAAAAATTGGTAATGGTTGGTGCTGCTGGAATCTTACGTTGGGGGAAATCGAATAAGAGAAATGTTGTTTGTAAAGAGGCTGAGGTTGGACCGAGTGAAAGATTTCGATGGAATCGTAGGAAGAAGTTTGATGTTGATGAGGTTGGAATGTTTCATGTTGTTACAACAAAGAATAAGGAGGTGCATTTTGTTTGTGAAGGTGGGGTTGAAATGGCTGAGTTGTGGGTTAGGGGGATTAGATTAGTAACAAGAGAAGCCATTTTTGGTTCTAGGGCTAATACTAGTTGA 2289 0.3976 MINSGSALRKQVFPIDFETEMSQLLVDAAHHGHTDTAMECLANSSVDVNFIGTTMLKSKTTEISLHDESPHRVNSVYEEFKTEVTALFLAAHSGNLTLVRKLMNVGANVNVRLFRGYATTAAVREGHLNVLEVLINGGASQLACEEALLESSYVGRARFAEVLMQSNMIRPHVAVHALVSACCRGFVEVVDVLIKQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLEVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPYPITWCAVEYFESTGTILNMLLHHLSPNTFHIGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEETNLHPIHMAARLGLYNILQCLINGNCNLDSQTKFGDTALLICTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTAISTHWKEYQKAVLDIIRAGKFIKSSNASRFSALLFATRANDIDALKKLVENRNINLDEQNENGFSAVMISASEGNVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGENVHKVMFEYAFKKGCLSISTLAEANPLHRAACYGDINMVEKLLKERNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLAREGNRKGNDAENVIMDELARRVVLCGVRVKKHTKCGKGLPHKKKLVMVGAAGILRWGKSNKRNVVCKEAEVGPSERFRWNRRKKFDVDEVGMFHVVTTKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGSRANTS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03345 762 Gene3D - 9 152 IPR036770 -
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Vivi3g03345 762 Coils Coil 459 479 - -
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 177 205 IPR002110 GO:0005515
Vivi3g03345 762 SUPERFAMILY Ankyrin repeat 307 630 IPR036770 -
Vivi3g03345 762 Gene3D - 530 633 IPR036770 -
Vivi3g03345 762 Gene3D - 425 529 IPR036770 -
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Vivi3g03345 762 Pfam Ankyrin repeats (3 copies) 550 615 IPR002110 GO:0005515
Vivi3g03345 762 Pfam Ankyrin repeats (3 copies) 446 507 IPR002110 GO:0005515
Vivi3g03345 762 Pfam Ankyrin repeats (3 copies) 317 405 IPR002110 GO:0005515
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 82 114 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 584 613 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 82 111 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 173 202 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 114 143 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 219 248 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 376 405 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 445 473 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 20 50 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 306 335 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 550 580 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 479 508 IPR002110 GO:0005515
Vivi3g03345 762 SMART ANK_2a 343 372 IPR002110 GO:0005515
Vivi3g03345 762 Gene3D - 169 257 IPR036770 -
Vivi3g03345 762 SUPERFAMILY Ankyrin repeat 24 253 IPR036770 -
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat region circular profile. 82 112 - -
Vivi3g03345 762 Gene3D - 290 424 IPR036770 -
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 376 408 IPR002110 GO:0005515
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 550 583 IPR002110 GO:0005515
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat profile. 479 511 IPR002110 GO:0005515
Vivi3g03345 762 ProSiteProfiles Ankyrin repeat region circular profile. 479 506 - -
Vivi3g03345 762 PANTHER ANKYRIN REPEAT-CONTAINING 19 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03345 Vivi-Chr3 56297847 56300411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03345 370 622 Miscellaneous Gene Families AT1G07710 25.869 2.30e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03345 - - mtr:11444172 1298.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03345 3 56297847 56300411 Vivi3g03345 3 56297847 56300411 ECH