Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1363 ATGTTCTGCATGGATTATAGAAGTGTATGTCTTATTCGGTGGTACATTGGTTCATTGGTGAAGCATATATCTCCTATGCTGAATCGTTCTCATCCATTTGTTTTTTCCTCTCTTCCTTTTTTGGTTCCACACAGGCGGGTAGCACAGGAACTGGGTGTTCAGCTTGGTGAGGAAGTGGGTTATGCCATTCGATTTGAAGATAGAACTTCAGAAAGAACACGTATTAAATACCTTACGGATGGAGTCCTCCTTCGTGAAAGTCTTTCTAACCCTGATCTCAGTCAGTATTCTGTAATTATATTGGATGAAGCTCATGAAAGAAGTCTAAACACGGACATATTATTGGGACTGATGAAAAGATTGGTTAAAATGCGTGCCTCCAATTTGAAGGTTCTAATCACTTCCGCCACTCTTGATGGTAGCAAAGTATCAAGATTTTTCTCAAACTGCCCCATACTTACCGTCCCAGGGAAATTATTCCCTGTTGAAATATTGTACAGCGCTGAGCTTCCTAAAAGCTATATCGAGTCTTCTTTGAAAACAGCTATTGATATACATGTTCGGGAACCAGAAGGTGATGTTTTAATATTCATGACTGGGCAGGATGATATAGAGAAGTTGGTAGTGAAGTTGGAGGAGAGAGTCCGAAGCTTGGAGGAAGGTTCTTGTATGGATGCCATAATCCTTCCCCTTCATGGTTCTTTACCACCCGAATTGCAGGTCCGTGTATTCAGTCCTCCACCTCCAAATTGCAGGCGATTTATTGTTGCCACAAACATAGCTGAAACTTCATTGACTGTTGATGGTGTTGTGTATGTTATTGATTCTGGTTATGTGAAGCAGCGGCAATACAACCCATTAACTGGCATGTATTCCCTTGATGTTGTTCAAATTAGCAAGGTACAAGCCAATCAACGTGCAGGAAGAGCCGGAAGAACACGTCCTGGGAAGTGCTACCGATTATACCCATCTATGGTTTACCATGATGACTTCCTGGATGTAACAGTTCCTGAAATACAGCGATCTTCTCTTGCTGGAAGTGTTCTTTATTTGAAATCATTAGATCTCCCTGATATTGATATTCTCAAATTTGATTTTCTTGATTCCCCTTCCTCTGAGTCTCTACAAGATGCTTTAAGGCAATTATATCTCATTGATGCTATTGATGAAAATGGATCAATTACAAGTGTTGGACGAACAATGGCTGAGCTTCCACTGGAATCTTCACTCTCAAGGATGTTAATGGAGGCAAATGAGTGTGGTTGCTTGTCCCAGGCTTTGACTGTTGCTGCTATGTTGTCAGCAGAAACAACATTGCTTCCTGGTCGAAGCAAGAGCACTGAGAAGAAAAGGAAACACACTCCAACAGACCTTCCTGATGGTTCTGGCTGGGGTGATCACATCCAGTTGCTACAGATCTTTGAGCAGTGGGATCAAACAGACTATGATCCAAATTGGTGCAAAGATCATGGTTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTTCGGAAACAGTTGTCTCAGATAATGCAGAAAATGGCTAGAGGGTCGTTAGATGTACGAGCCAAAGAAAGATGGAAAGAAAGCCGACAAGACTACAAGAATTTGAGGAAGGCTTTGTGTGCAGGCTATGCAGTAGAGATGTCATGGGTCATGCCCATTTTGAAGAAACTTGAGAACCTAAATATCAACAAACTCAGTGGTGGGTCCAATCAAGTTGAAGACAGGACTGAGGAGAAATCCTCGGACTCTCCAAAGAAATCTGTTGATGTTGCCAGGCCTCCTAATGACGCTGAAAGTAGAATACAGGCAGCAAGGGATCGTTTTATGGCCCGTAAAGCAAAGAGATAG 1854 0.4223 MFCMDYRSVCLIRWYIGSLVKHISPMLNRSHPFVFSSLPFLVPHRRVAQELGVQLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPDLSQYSVIILDEAHERSLNTDILLGLMKRLVKMRASNLKVLITSATLDGSKVSRFFSNCPILTVPGKLFPVEILYSAELPKSYIESSLKTAIDIHVREPEGDVLIFMTGQDDIEKLVVKLEERVRSLEEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPLTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYHDDFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALRQLYLIDAIDENGSITSVGRTMAELPLESSLSRMLMEANECGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPTDLPDGSGWGDHIQLLQIFEQWDQTDYDPNWCKDHGLQVRGMMFVKDVRKQLSQIMQKMARGSLDVRAKERWKESRQDYKNLRKALCAGYAVEMSWVMPILKKLENLNINKLSGGSNQVEDRTEEKSSDSPKKSVDVARPPNDAESRIQAARDRFMARKAKR* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1363 617 SMART ha2_5 377 471 IPR007502 GO:0004386
Vvi1g1363 617 CDD DEXHc_RHA-like 45 155 - -
Vvi1g1363 617 Gene3D - 363 518 - -
Vvi1g1363 617 MobiDBLite consensus disorder prediction 567 617 - -
Vvi1g1363 617 MobiDBLite consensus disorder prediction 440 462 - -
Vvi1g1363 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 516 IPR027417 -
Vvi1g1363 617 MobiDBLite consensus disorder prediction 573 610 - -
Vvi1g1363 617 Pfam Helicase conserved C-terminal domain 186 313 IPR001650 -
Vvi1g1363 617 Gene3D - 159 334 IPR027417 -
Vvi1g1363 617 FunFam probable ATP-dependent RNA helicase DHX40 159 333 - -
Vvi1g1363 617 Pfam Helicase associated domain (HA2) 378 476 IPR007502 GO:0004386
Vvi1g1363 617 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 97 106 IPR002464 -
Vvi1g1363 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 156 IPR014001 -
Vvi1g1363 617 Gene3D - 43 158 IPR027417 -
Vvi1g1363 617 PANTHER ATP-DEPENDENT RNA HELICASE 45 550 - -
Vvi1g1363 617 FunFam DEAH (Asp-Glu-Ala-His) box polypeptide 29 37 158 - -
Vvi1g1363 617 SMART helicmild6 205 314 IPR001650 -
Vvi1g1363 617 Coils Coil 201 221 - -
Vvi1g1363 617 CDD SF2_C_RHA 160 322 - -
Vvi1g1363 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 178 355 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1363 Vvi-Chr1 19816505 19829033 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1363 K12818 - vvi:100245855 991.104