Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03344 ATGAAACTGTGTCAAAGAGAAATCGAAAAACTTCAACTCCACAACGCTGGTTTTCTTGCTCAGAAACGTCTCGCTCGTGGTTTGAAACTCAACCATCCTGAAGCTGTTGCTCTTATAGCATCGCAGATTGTTGAATTTGTTCGGAATGGTGATAAGTCTGTTGCAGAGTTAATGGCAATCGGAACACAGCTATTAGGAAGGAGACAAGTTCTTTCATCTGTTCCACATATCTTAGAAACTGTTCAGGTTGAAGCTACCTTTCCCGATGGGACTAAGTTAATCACGGTTCATGCCCCAATTGCTTGTGAAAATGGAAATCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACATGTTTATCGAGAACAATGAAGATTACAACATTCCTGGTGAAATAAAATCTGGAGATGGAAGCCTGATTCTTAACGCCGGAAGGGAGGCTGTCTCTCTTAAAGTTGTAAACAATGGAGACAGACCAATTCAGGTTGGAAGCCACTATCATTTTATTGAAGTAAATCCCTTCTTAATCTTTGATCGAAGAAAATCATTTGGCAAACGGCTTAATATAGCATCTGGGACTACCACACGCTTTGAGCCAGGGGAATGTAAAAGTGTTATACTTGTAAGCATTGGAGGTGACAGAGTCATCCGAGGTGGTAACAACATTGTTGATGGTCCTGTTAATGATTTGAAGTGCAAAGAAGCCATGAAGGATGTTATAACAAGGGGATTCGGGCATAAGGAAGATGAAAATGCAAGGGAAGGTATTACCGGTGAAGACTATTCATTGACTAAGGTAATTCCTCGAGAGGAATATGCTAACAAGTATGGCCCCACTACTGGTGACAAAATTCGTCTTGGTGACACTAACTTGTTTGCGGAAATTGAAAAAGATTTTGCTGTCTATGGTGATGAATGTGTTTTTGGAGGAGGGAAAGTTATAAGAGATGGAATGGGTCAGTCGTGTGGCCATCCACCTGATCATCCTTCCTTGGATACTGTTATAACAAATGCTGTGATCATCGATTATACTGGAATTTACAAAGCAGATATTGGTATTAAGGATGGCCTTATTGCCTCAATTGGAAAATCAGGAAACCCAGACGTTATGAATGGTGTATTTGATAATATGATCATTGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTTATTGTAACAGCTGGTGCTATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTTTATGAAGCCATATCAAGTGGGATCACAACATTGGTGGGCGGAGGAACTGGACCAGCTTTTGGAACACGTGCTACAACTTGCACACCGGCACCGATTCAGATGAAAATGATGCTGCAATCAACAGATGACCTGCCTCTGAACTTCGGTTTTACTGGAAAAGGGAATTGTGCCAAGCCTTATGAATTACATGAAATAGTGAAAGCTGGAGCTATGGGACTGAAGCTGCATGAGGATTGGGGAACTACACCAGCTGCTATAGAGTGTTGCTTGGATGTTGCAGAAAAACATGATATCCAGGTTAACATACATACTGACACCTTAAATGAATCTGGGTTTGTGGAACACACAATTGCCGCATTTAAAGGAAAAAATATTCATGCTTACCACAGTGAAGGTGCAGGTGGTGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAGAATGTCCTACCCTCATCAACAAATCCTACACGTCCTTTTACATCTAATACCATAGACGAGCATCTTGACATGTTGATGGTCTGCCATCATCTTGATAAGGATAGTCCAGAAGATGTTGCTTTTGCAGAATCAAGGATAAGAGCCGAAACAATCGCTGCTGAAGATATTTTGCATGATATGGGTGCAATTAGCATTATTTCTTCTGATTCCCAGGCTATGGGTAGAATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCGATAAGATGAAGTCACAAAGAGGACCACTGCAGCCCGATGATTGCAACAATGACAACTTTCGAATCAAACGTTATGTTGCAAAGTACACTATAAATCCAGCTATAGCAAATGGTTTGTCACGGTATATTGGTTCAGTTGAGGTAGGAAAGTTAGCTGATCTTGTATTATGGCAACCATCCTTTTTTGGAGCAAAACCCGAAATGGTGATCAAAGGCGGTGACATTGCATGGGCTGACATGGGTGACGCAAACGCTAGCATCCCAACACCTGAACCGATGATTATGAGACCTATGTTTGGAGCATATGGCAAGGCTGGCAATGCAAACTCTATTGCTTTTGTGAGCAAGGCAGCTTTGGACTACGGTGTAAAAGCTTTATATGGACTTGACAAGAGGGTGGAAGCCGTGGAGAATGTGAGAAAGATTAGCAAACTAGACATGAAACTGAACGACGCCCTTCCAGAAATCACTGTGGACCCAGAGACATACACAGTCACTGCAGATGGAGAGGTTCTAACCTGCACTCCGGCCACTACTGTTCCTCTTTCTAGAAATTACTACCTCTTCTAA 2520 0.4187 MKLCQREIEKLQLHNAGFLAQKRLARGLKLNHPEAVALIASQIVEFVRNGDKSVAELMAIGTQLLGRRQVLSSVPHILETVQVEATFPDGTKLITVHAPIACENGNLELALFGSFLPVPSLDMFIENNEDYNIPGEIKSGDGSLILNAGREAVSLKVVNNGDRPIQVGSHYHFIEVNPFLIFDRRKSFGKRLNIASGTTTRFEPGECKSVILVSIGGDRVIRGGNNIVDGPVNDLKCKEAMKDVITRGFGHKEDENAREGITGEDYSLTKVIPREEYANKYGPTTGDKIRLGDTNLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSCGHPPDHPSLDTVITNAVIIDYTGIYKADIGIKDGLIASIGKSGNPDVMNGVFDNMIIGANTEVIAGEGFIVTAGAIDCHVHFICPQLVYEAISSGITTLVGGGTGPAFGTRATTCTPAPIQMKMMLQSTDDLPLNFGFTGKGNCAKPYELHEIVKAGAMGLKLHEDWGTTPAAIECCLDVAEKHDIQVNIHTDTLNESGFVEHTIAAFKGKNIHAYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDSPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLQPDDCNNDNFRIKRYVAKYTINPAIANGLSRYIGSVEVGKLADLVLWQPSFFGAKPEMVIKGGDIAWADMGDANASIPTPEPMIMRPMFGAYGKAGNANSIAFVSKAALDYGVKALYGLDKRVEAVENVRKISKLDMKLNDALPEITVDPETYTVTADGEVLTCTPATTVPLSRNYYLF 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03344 839 CDD Urease_alpha 272 838 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 ProSiteProfiles Urease domain profile. 401 839 IPR017951 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 CDD Urease_gamma 5 100 IPR002026 GO:0016151|GO:0043419
Vivi3g03344 839 NCBIfam urease subunit beta 133 233 IPR002019 GO:0035550|GO:0043419
Vivi3g03344 839 NCBIfam urease subunit gamma 1 101 IPR002026 GO:0016151|GO:0043419
Vivi3g03344 839 Pfam Amidohydrolase family 397 722 IPR006680 GO:0016787
Vivi3g03344 839 SUPERFAMILY Metallo-dependent hydrolases 402 839 IPR032466 -
Vivi3g03344 839 PIRSF Urease 1 839 IPR008221 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 PANTHER UREASE 1 839 - -
Vivi3g03344 839 NCBIfam urease subunit alpha 272 839 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 Pfam Urease beta subunit 134 230 IPR002019 GO:0035550|GO:0043419
Vivi3g03344 839 SUPERFAMILY Composite domain of metallo-dependent hydrolases 681 750 IPR011059 GO:0016810
Vivi3g03344 839 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Vivi3g03344 839 Hamap Urease subunit alpha [ureC]. 270 839 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 ProSitePatterns Urease nickel ligands signature. 399 412 IPR029754 GO:0016151
Vivi3g03344 839 FunFam Urease subunit alpha 4 124 - -
Vivi3g03344 839 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Vivi3g03344 839 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Vivi3g03344 839 Gene3D Urease, subunit C, domain 1 270 752 IPR011059 GO:0016810
Vivi3g03344 839 PRINTS Urea amidohydrolase (urease) protein signature 567 584 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 PRINTS Urea amidohydrolase (urease) protein signature 606 622 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 PRINTS Urea amidohydrolase (urease) protein signature 699 712 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 PRINTS Urea amidohydrolase (urease) protein signature 673 688 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vivi3g03344 839 Pfam Urease alpha-subunit, N-terminal domain 272 391 IPR011612 -
Vivi3g03344 839 CDD Urease_beta 133 232 IPR002019 GO:0035550|GO:0043419
Vivi3g03344 839 Hamap Urease subunit beta [ureB]. 132 232 IPR002019 GO:0035550|GO:0043419
Vivi3g03344 839 Gene3D - 401 820 - -
Vivi3g03344 839 Pfam Urease subunit beta-alpha linker domain 232 265 IPR040881 -
Vivi3g03344 839 SUPERFAMILY Urease, beta-subunit 133 261 IPR036461 -
Vivi3g03344 839 Gene3D Urease, beta subunit 150 269 IPR036461 -
Vivi3g03344 839 SUPERFAMILY Composite domain of metallo-dependent hydrolases 271 449 IPR011059 GO:0016810
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03344 Vivi-Chr3 56282428 56292775 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03344 K01427 - gmx:547672 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03344 3 56282428 56292775 Vivi3g03344 3 56282428 56292775 ECH