Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1365 ATGATGGTATTCAGCAACGCCGGCACCGGATTCCTGGCCGGAAAACAGGTGTTCCCGATCGACTACGCAGCAGAAGTGTCTCAGAAGCTCGTGGATGCTTCACACCGCAACGATCTGAAGTCGGCGTTGGACTGCATCGCCGATCCTTTCGTCGACGTCAGCTTCATCGGAACTGTGTACTTGAGGGCCAGGAAGACGGAGGTTGTTCTCCACGACGAGAGTCCGCACGAAGTTCGCGTGGAGTTCGAGGAGTTCAAGACCGAGGTAACCGCTCTGTTTCTCGCTGCACATGCTGGAAACGTTGCGCTCGTCAGGAAATTGCTGAGTGTTGGAGCTAATGTGAACCAAAAGCTGTTTCGAGGCTATGCGACGACAGCAGCCGTGAGGGAGGGCCATCTGGAGATATTGCAGACACTTATCAATGCAGGGGCGTCTCAGCCGGCATGCGAGGAGGCTTTACTGGAGGCAAGCTATCTTGGGCGGGCCAGACCTGCCGAGTTGCTCATGGGCTCTGAGATGATCCGCCCATATGCTGCTGTGCATGCTCTTGTCACCGCTTGCTGCAGAGGGTTTGTGGATGTTGTGGACACGCTCATCAAGTGTGGAGTTGATGCCAATGCAACTGATAGGATGCTGCTTCAGTCTTCCAAGCCTTTCATGCACACCAATGTTAACTGTAATGCGCTTGCTGTTGCCATTGTTAGTAGACAGGTCTCTGTTGTTCGATTGCTATTACAGGCTGGCGTCAGAGTTGACATCAAAGTTAGACTTGGAGCCTGGTCATGGGACACAGCTACAGGAGAAGAATTTCGGGTAGGAGTGGGATTGGCAGAGCCCTACTCAATCACCTGGTGTGCAGTGGAGTATTTTGAAGCCAGCGGTGCTATCTTGCGCATGCTCTTGCAACACCACTCTGTTAACAACCATCACTTAGGGAGGACCCTTGTGCACCATGCCATCCTATGTGGCAATCCAGGAGCACTTGATGTGCTATTGAATTGTGGTGCAGATGTAGAATTGCCGGTGAAAACAACATCAAAAACAGAGTTACGCCCTATACATTTGGCTGCACAGTTTGGATTGGCTAAAATTCTTCAATGCCTGATCAATGCTGGCTGCAATCTCAACTCTCCAACAGCATCTGGAGAATCTGCACTAATGATCTGCACAAGATACAAACATGACGAGTGTCTTAGAGTTTTGGCCGCAGCTGGTGCTGACTTTGGTTTAGTCAATGCAGCTGGGCAATGCGCCTGCTCGATTGCAAGCTCAATTCGGTGGACTCTTGGCTTTAGACAAGCAGTGTTAGATGTAATTCATGCTGGGAGCACTGTTGCATCAAGCAATACTTCAATATTTTCCCCTCTAATTTTTGCAACTCAAGCAAATGATGCTGTGGCCCTGAAAAAACTCATTGAGCGGCCAGATATCGATATTGACGAACAGGATCAAAATGGATTATCAGCAGCCATGATTGCAGCTGCAGGGGGTCAAGTGGATGCCTTCCGGTTACTTGTTTATGCTGGAGCTAATGTAAAGCTGCAGAACAAATACGGTGAGACAGCACTTACGCTATCAGAGGCTAACCATAATGCCGATCTATTTGAAAAGGTGATCCTTGAATATGCGCTTGAAAGAGGAAACCATCGTTCTGCTGGATTTTACCCTTTACATTGTGCAGCACGCTGTGGAGACTTAGATTTGGCTCGGACATTAGCCAACAGAGGTTATGACATCAACTTTGCTGATACTGATGGATATACTCCACTCATGTTAGCAGCAAGGGGAGGCCATGGCAGCATGTGTGAGTTCTTGATCTCATGCGGGGCAATATGCAACATTAAGAATGAGAGACATGAGACAGCGCTCGTGCTTGCTAGGAAAAATGGATTTGGGAACGGCGCAGAGCGTGTGATACTTGATGAGCTTGCCCGAACACTTGTGCTAGATGGGGCTCCTGTGAAGAAGCACACAAAGAGAGGCAAAGGAACTCCCCACTGTAAACTACTGAAAATGGTGGATGGAATTGGGGTGTTGAGGTGGGGGAAGTCAAGCAAGAGGAATGTGATCTGCAGGGGGGCCGAGCTCGGGCCCAGCACATCATTCCGGTGGAACCGGAGAAGAAAGATTGACGCTGATGAGCCAGGACTGTTCCATGTAATGACCACAAAGAACAAGGAGGTGCATTTTGTATGTGAAGGTGGAATTGAAGTTGCTGAATTGTGGGTGAGGGGCATCAAGCTTGTGACAAGGGAAGCCATTTTCGGAAAGAAACAGAACGATATGTGA 2289 0.4928 MMVFSNAGTGFLAGKQVFPIDYAAEVSQKLVDASHRNDLKSALDCIADPFVDVSFIGTVYLRARKTEVVLHDESPHEVRVEFEEFKTEVTALFLAAHAGNVALVRKLLSVGANVNQKLFRGYATTAAVREGHLEILQTLINAGASQPACEEALLEASYLGRARPAELLMGSEMIRPYAAVHALVTACCRGFVDVVDTLIKCGVDANATDRMLLQSSKPFMHTNVNCNALAVAIVSRQVSVVRLLLQAGVRVDIKVRLGAWSWDTATGEEFRVGVGLAEPYSITWCAVEYFEASGAILRMLLQHHSVNNHHLGRTLVHHAILCGNPGALDVLLNCGADVELPVKTTSKTELRPIHLAAQFGLAKILQCLINAGCNLNSPTASGESALMICTRYKHDECLRVLAAAGADFGLVNAAGQCACSIASSIRWTLGFRQAVLDVIHAGSTVASSNTSIFSPLIFATQANDAVALKKLIERPDIDIDEQDQNGLSAAMIAAAGGQVDAFRLLVYAGANVKLQNKYGETALTLSEANHNADLFEKVILEYALERGNHRSAGFYPLHCAARCGDLDLARTLANRGYDINFADTDGYTPLMLAARGGHGSMCEFLISCGAICNIKNERHETALVLARKNGFGNGAERVILDELARTLVLDGAPVKKHTKRGKGTPHCKLLKMVDGIGVLRWGKSSKRNVICRGAELGPSTSFRWNRRRKIDADEPGLFHVMTTKNKEVHFVCEGGIEVAELWVRGIKLVTREAIFGKKQNDM* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1365 762 Gene3D - 538 638 IPR036770 -
Vvi1g1365 762 Gene3D - 434 537 IPR036770 -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 348 380 IPR002110 GO:0005515
Vvi1g1365 762 Pfam Ankyrin repeats (3 copies) 541 616 IPR002110 GO:0005515
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat region circular profile. 485 517 - -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Vvi1g1365 762 SUPERFAMILY Ankyrin repeat 89 423 IPR036770 -
Vvi1g1365 762 Gene3D - 280 344 IPR036770 -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 485 517 IPR002110 GO:0005515
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Vvi1g1365 762 SUPERFAMILY Ankyrin repeat 309 662 IPR036770 -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 224 253 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 485 514 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 451 481 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 348 377 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 552 581 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 178 207 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 311 340 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 585 614 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 119 148 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 381 410 IPR002110 GO:0005515
Vvi1g1365 762 SMART ANK_2a 87 116 IPR002110 GO:0005515
Vvi1g1365 762 Gene3D - 73 270 IPR036770 -
Vvi1g1365 762 Gene3D - 345 433 IPR036770 -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat profile. 87 119 IPR002110 GO:0005515
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat region circular profile. 87 115 - -
Vvi1g1365 762 PANTHER ANKYRIN REPEAT-CONTAINING 23 735 - -
Vvi1g1365 762 ProSiteProfiles Ankyrin repeat region circular profile. 585 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1365 Vvi-Chr1 19834919 19840992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1365 454 665 Miscellaneous Gene Families AT5G60070 25.778 7.49e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1365 - - vvi:100249369 1511.12