Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01528 ATGATGGTGCTGGCGAATTCTGGTTCGGGCCTTCGGAGACAGGTTTTTCCCGTGGACTATGAAACGGAGCTTTCGCAGCGTCTCGTAGAAGCGGCTTATTACGGCGACACCGACTCTGCGTTTGACTTTGTCGACAATCCCTCTGTCGACGTGAACTTCGTCGGAACGGTGTCGTTTAAGTTCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCGTGGCCGCGCACACAGGGAATTTGACACTTCTTCGGAAGCTTCTGGTAACGCTTCTCAATGCTGTTTTCATTGTGTTTTGTTGTGATTTGTTTCTTAAAACGACGTCGAAGCATTCGACACAACCAAATGAAGCTGTTCTGACAAACGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCGTCAGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTCATCAATGCTGGGGCATCACAACTTGCATGCGAGGAGGCTCTAATGGAAGCAAGCTATTTGGGCAGGGCCAGATTTGTTGAATTACTCGTGCAATCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATCGGACTTTGCTTCAATCTTCAAAGCCATTTCTTCATGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTGATGTTGTTAGATTACTGTTGCAGGTTGGAGTAAGGCTTGACATGAAGGTCAAACTGGGGGCTTGGTCCTGGGACACAGATACGGGAGAAGAATTTCGTGTAGGTGTTGGACTAGCTGAGGCCTATCCAATCACCTGGTGTGCCGTGGAGTATTTTGAGTCCACTGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCACCAAATAGCTTACACATTGGGAGGAGTCTCTTGCACCATGCTATCATCTGTAACAACGAAAGAGCTGTAAATATTCTTCTAAACAATGGTGCTGATACAGAAGTCACCGTGCAAACAACTGAAGAAACCAATGAACGGCCTATTCACATCACTGCACGGGTTGGATCATGCAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAACTTGGATTCCCAGACAAAATGTGGAGATACAGCACTGATGATATGCACAAGGCACAAACATGAGAAGTGCCTTGGGGTCCTAACATCAGCAGGTGCTGATTTGGGAATGGTAAATTCATCTGATCAATGTGCAACTTCAATTGCAAACTTTGTTCAGTGGACTAAAGTCTACCAGAAAGTGATATTGGATATAATCAGAGCAGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTCCGCATTGTTATTTGTAACTCGTGCTAATGACATGGAGGGTATGAAGAAACTCATTGAAAATGAGAACATAAATCTGAATGAGCAAAATGCAAATGGATTTTCTGCTGCTATGATAGCTGCTGTAGTGGGTAACGTGGAGGCTTTCAAGTTGCTTCTTTATGCAGGAGCTGACGTGACTAGGCTTAAAAACAAATATGGTTTGACAGCACTTAACCTCGTTGATGTGAGCCAAAACAGTGAAGCATTCCACAAGGTGATGCTTGAATATGCCCTTAAAGGAGGAGGCGATGGTTCAATTGAGGCAAACCCTCTCCACCGAGCAGCTTGCTACGGAGACATAAGTATTGTTCACAAACTACTAAAAGAGGGTTATGAAGTAAATGCTTTTGATGGTGAAGGATATACTCCTTTGATGTTAGCAGCAAGAGGGTGCCGTGGTGAAATGTGTGAGCTTTTGATCTCATATGGAGCTGAATGTGATATTCAGAATGAGAGACATGAGACAGCCCTTTCACTTTCCAGAGAAAATGGTCCAGGAAATGATGCTGAACGTGTGATTTTGGATGAACTAGCTAGAAAACTGGTTTTGGGTGGACATCGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTTCCTACAGATGATTGGTGGTGCTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGGCCTAGTGTGAAATTTCGGTGGAATCGTAGGAAGAAGTTTGATGTTGAGGAACCAGGATTGTTCCATGTTGTTACTACAAAAGATAAACAGGTACATTTTGTGTGTGAAGGTGGGATTGAAATGGCTGATTTGTGGGTAAGGGGGATTCAATTAGTAACTAGAGAAACCATTTCTGGTAGAAGAGCTCCTGAGGTTTGA 2385 0.4474 MMVLANSGSGLRRQVFPVDYETELSQRLVEAAYYGDTDSAFDFVDNPSVDVNFVGTVSFKFKTTEIVLQDESPHRVNSAYEEFKTELTALFVAAHTGNLTLLRKLLVTLLNAVFIVFCCDLFLKTTSKHSTQPNEAVLTNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFVELLVQSNMIRPQVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVRLDMKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLCHLSPNSLHIGRSLLHHAIICNNERAVNILLNNGADTEVTVQTTEETNERPIHITARVGSCNILQCLINGGCNLDSQTKCGDTALMICTRHKHEKCLGVLTSAGADLGMVNSSDQCATSIANFVQWTKVYQKVILDIIRAGKVVKSSNAARFSALLFVTRANDMEGMKKLIENENINLNEQNANGFSAAMIAAVVGNVEAFKLLLYAGADVTRLKNKYGLTALNLVDVSQNSEAFHKVMLEYALKGGGDGSIEANPLHRAACYGDISIVHKLLKEGYEVNAFDGEGYTPLMLAARGCRGEMCELLISYGAECDIQNERHETALSLSRENGPGNDAERVILDELARKLVLGGHRVKKHTKCGKGSPHGKFLQMIGGAGILRWGKSSKRNVICKEAEVGPSVKFRWNRRKKFDVEEPGLFHVVTTKDKQVHFVCEGGIEMADLWVRGIQLVTRETISGRRAPEV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat region circular profile. 584 615 - -
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat region circular profile. 516 543 - -
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Vimu6g01528 794 Pfam Ankyrin repeats (3 copies) 347 441 IPR002110 GO:0005515
Vimu6g01528 794 Pfam Ankyrin repeats (3 copies) 572 648 IPR002110 GO:0005515
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat profile. 342 374 IPR002110 GO:0005515
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat region circular profile. 342 371 - -
Vimu6g01528 794 Gene3D - 338 461 IPR036770 -
Vimu6g01528 794 Gene3D - 571 678 IPR036770 -
Vimu6g01528 794 Gene3D - 209 295 IPR036770 -
Vimu6g01528 794 Gene3D - 462 570 IPR036770 -
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat region circular profile. 617 649 - -
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Vimu6g01528 794 Gene3D - 17 208 IPR036770 -
Vimu6g01528 794 PANTHER ANKYRIN REPEAT-CONTAINING 22 774 - -
Vimu6g01528 794 SUPERFAMILY Ankyrin repeat 28 288 IPR036770 -
Vimu6g01528 794 SUPERFAMILY Ankyrin repeat 343 668 IPR036770 -
Vimu6g01528 794 Coils Coil 493 516 - -
Vimu6g01528 794 SMART ANK_2a 255 284 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 209 238 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 379 408 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 516 545 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 584 613 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 342 371 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 617 646 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 150 179 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 482 512 IPR002110 GO:0005515
Vimu6g01528 794 SMART ANK_2a 412 441 IPR002110 GO:0005515
Vimu6g01528 794 ProSiteProfiles Ankyrin repeat profile. 516 548 IPR002110 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01528 - - gmx:100795638 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01528 6 14373349 14378530 Vimu6g01528 6 14373349 14378530 ECH