Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1352 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1353 . . . . Adu03g04513 . . . . . . Ahy20g0998 . Aip10g01053 . . . Amo20g0416 . . Arst3g05966 . . . . . Bva06g01765 . . . . . . . . Dod04g0594 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco4g02051 . . . . . Pste3g02697 . . . . . Pumo6g01282 . Pvu2g1814 . Rops11g03745 . Seca6g01739 . Spst3g00126 . . . . . . . . . . . Vian1g02703 . Vifa2g02477 . Vimu11g01822 . Viun3g02301 . . . . .
Vvi1g1354 . . . . . Adu06g02411 . . . . . . . . . . . . . . . Arst6g03097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu8g1550 . Rops8g02270 . Seca2g03053 . . . . . . . . . . . . . . . . . . . Viun5g02215 . . . .
Vvi1g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1356 . . . . Adu03g04512 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02600 . Lasa7g03915 . . . . . . . . . . . . . Mepo2g03841 . . . . . . . Phac2g02759 . Phco4g02053 . . . . . Pste3g02693 . . . . . . . Pvu2g1816 . . . . . Spst3g00124 . . . . . . . . . . . . . . . Vimu11g01820 . . . . . . .
Vvi1g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1360 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g1811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1351 Chr1 19711198 19712696 -
Vvi Vvi1g1352 Chr1 19713136 19715139 -
Vvi Vvi1g1353 Chr1 19723428 19728410 +
Adu Adu03g04513 Chr03 134500272 134504023 -
Ahy Ahy20g0998 Chr20 14592857 14596385 +
Aip Aip10g01053 Chr10 13929942 13933438 +
Amo Amo20g0416 Chr20 5214526 5218183 -
Arst Arst3g05966 Chr3 133263930 133266565 -
Bva Bva06g01765 Chr06 12232569 12232805 +
Dod Dod04g0594 Chr04 8503655 8512484 -
Phco Phco4g02051 Chr4 40692771 40695684 +
Pste Pste3g02697 Chr3 19843298 19845319 -
Pumo Pumo6g01282 Chr6 16995949 16998574 +
Pvu Pvu2g1814 Chr2 32707663 32710036 +
Rops Rops11g03745 Chr11 71152981 71157307 +
Seca Seca6g01739 Chr6 72156553 72157080 +
Spst Spst3g00126 Chr3 2223520 2232029 -
Vian Vian1g02703 Chr1 40867131 40869765 +
Vifa Vifa2g02477 Chr2 649974164 649976966 +
Vimu Vimu11g01822 Chr11 25257727 25260622 -
Viun Viun3g02301 Chr3 20343001 20348666 +
Vvi Vvi1g1354 Chr1 19729451 19730764 +
Adu Adu06g02411 Chr06 97820027 97821588 +
Arst Arst6g03097 Chr6 97016901 97018408 +
Pvu Pvu8g1550 Chr8 31157871 31159162 -
Rops Rops8g02270 Chr8 52262222 52263331 -
Seca Seca2g03053 Chr2 91640706 91641458 -
Viun Viun5g02215 Chr5 28497917 28499212 -
Vvi Vvi1g1355 Chr1 19730785 19737127 -
Vvi Vvi1g1356 Chr1 19746049 19748062 +
Adu Adu03g04512 Chr03 134496626 134499762 +
Lapu Lapu3g02600 Chr3 48344710 48346909 -
Lasa Lasa7g03915 Chr7 625484839 625486930 +
Mepo Mepo2g03841 Chr2 47626440 47629678 +
Phac Phac2g02759 Chr2 29157551 29159480 -
Phco Phco4g02053 Chr4 40705035 40707074 -
Pste Pste3g02693 Chr3 19811763 19813623 +
Pvu Pvu2g1816 Chr2 32724650 32726691 -
Spst Spst3g00124 Chr3 2205615 2207519 +
Vimu Vimu11g01820 Chr11 25245841 25247922 +
Vvi Vvi1g1357 Chr1 19756966 19757328 -
Vvi Vvi1g1358 Chr1 19761842 19763729 -
Vvi Vvi1g1359 Chr1 19768992 19771314 +
Vvi Vvi1g1360 Chr1 19772966 19777638 -
Psa Psa7g1811 Chr7 130685060 130692032 +
Adu Adu03g04512 Chr03 134496626 134499762 +
Lapu Lapu3g02600 Chr3 48344710 48346909 -
Lasa Lasa7g03915 Chr7 625484839 625486930 +
Mepo Mepo2g03841 Chr2 47626440 47629678 +
Phac Phac2g02759 Chr2 29157551 29159480 -
Phco Phco4g02053 Chr4 40705035 40707074 -
Pste Pste3g02693 Chr3 19811763 19813623 +
Pvu Pvu2g1816 Chr2 32724650 32726691 -
Spst Spst3g00124 Chr3 2205615 2207519 +
Vimu Vimu11g01820 Chr11 25245841 25247922 +
Adu Adu06g02411 Chr06 97820027 97821588 +
Arst Arst6g03097 Chr6 97016901 97018408 +
Pvu Pvu8g1550 Chr8 31157871 31159162 -
Rops Rops8g02270 Chr8 52262222 52263331 -
Seca Seca2g03053 Chr2 91640706 91641458 -
Viun Viun5g02215 Chr5 28497917 28499212 -