Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0909 ATGATGATGTTGGTGAATTCTGGATCGATACGGAAACAGGTTTTTCCGATTGATTATGAGAGAGAAGTGTCGCAGAGGCTGGTTGATGCTGTTCATTACGGAAAAAACGACACTGCGTTGGAGCTAATGGCGGATCTCTACGTGGACGTGAACTTCGTGGGAACGGTGTCGTTTAAGTCCAAAACGACGGAGATCGTGCTGAACGATGAGTCGGCTCACCGAGTTAAATCGGTGTACGAGGAGTTCAAGACGGAGGTTACTGCTCTGTTCCTTGCCGCGCATTCTAACAACTTGACTCTACTCAGAAAGCTTTTGAGTGTCGGAGGCGACATAAACACGAGAGTGTTTCGCGGGTATGCGACGACGGCGACGGTGAGGGAAGGGCATCTAAAAGTGTTGGAGGTGCTCATCAATGGCGGGGCATCACAGCATGCATGTGAGGAGGCTTTGATGGAAACAAGCTACATGGGACGTGCCAGGTTTAGTGAGCTTCTCATGCAGACACACATGATTCGTCCTCATGTTGCTGTTCATGCTCTTGTCTCTGCTTCTTCCAGAGGCTTCGTTGATGTTGTTGACGTACTCATCAAGCATGGAGTGGATGTGAATGCAATTGATAGGACATTGCTGCAATCTTCGAAGCCATTTCTCCACGCCAATGTTGATTGCAATGCTTTGTTCGCTGCTGTTGTTAGCAGGCAGATTGATGTTGTCAGATTATTGTTGCAGGTTGGTGTAAAGCTTGATATGAAGGTGAAACTAGGGGCATGGTCATGGGAAACAGAAACAGGGGAAGAATTTCGAGTTGGTGTTGGTCTAGCCGAAGCATACCCTATAACATGGTGTGCTGTGGAATATTTTGAATCCACTGGTTCTATATTGCAGATGCTTCTTAGCCATATTTCCCCAAATACATTGCACATTGGAAGAACCCTCTTGCACCATGCCATTATCTGCAACAATGAGAAAGCTCTTAACATACTTCTAAAGAATGGCGCGAATGTTGAAGCGCCGGTGCAAACGGATGTGCACCCAATTCACATGGCTGCAAGGCTTGGATCATGCAGCATTCTTCAATGCTTGATTAAAGGTGGGTGTGACTTGGATTCAAGAACAAAATCTGGTGACACTGCAGTAATGATTTGTGTAAGGTATAAGCATGAGAAGTGCCTTAAAGTGTTAGCATCATCAGGTGCTGATTTGGGTTTGGTGAATTCATCTGGTCATTGTTTAGCTTCCATAGCGAATTCTGTTCAATGGAGTAATGTGTTCCAGAGAGTAATCCTTGATGTGATTAGATCAGGAAAGGTTGTTAAATCAAGCAATGCTTCGAGATTTTCTGCTTTGTTGTTTGCGACTCGCGCGAATGACATAGAGGGTGTTAAGAAACTTATTGAGAATGGCAACATTGATATGAATGAGCAAAATGAAAATGGTTTCTCGGCCGCGATGATCGCGGCTGCTATGGGTAATGTTGAGGCTTTTAGGCTTCTTCTTTTCGCCGGCGCCGACATACTTGAGCTTAAAAACAAGTATGGTTTGACAGCACTTAACCTCATAGATGTTAGCCAAAATGGTGAAGCATTTCAAAAGGTGATGCTTGAATTCGCGGTTAAAAGAGGGTGTGAAATTGAAGGTTCTAACGAAGTGAATCCTTTACACAGGGCAGCAAGATATGGAGCCATAGACATTGTTCAAAAGCTGTTAAAAGAAGGGAATTATGATGTGAATTCGTTTGATTCACAAGGATACACCCCATTGATGCTAGCGGCTAAAGCTTGCCGCGGCGACATGTGTAAGCTTTTGATCTCATTTGGAGCCAAATGTGAAGTTGAGAATGAGAGGCATGAGACAGCACTTTCACTAGCAAGAGAAAATGGAAATGGAAATGAAGCAGAGTTTTTGATATTAGATGAGGTAGCTAGAAGGTTAGTGTTGTGTGGTGGTAGAGTTAAGAAACACACAAAGTGTGGTAAAGGATCACCGCATAGCAAACAACTCAGGATGGTTAAGGTTGCTGGGATTTTAAGGTGGGGAAAAGCAAGTAAAAGGAATGTGGTTTGTGAAAATGCTAAGGTTGGAGCAAGTGAGAGATTTAGGTGGAATAGAAGGAAGAAGTTTGATGTTGATGAAGCAGGAATTTTTCATGTGGTTACTACAAAGAATAAGGAAGTGCATTTTGTATGTGAGGGTGGGGTGCAAATGGCTGAGTTGTGGGTTAGAGGTATTAGATTGGTTACAAGAGAAGCCTTTTTTGGTAATACTACTTAA 2271 0.4359 MMMLVNSGSIRKQVFPIDYEREVSQRLVDAVHYGKNDTALELMADLYVDVNFVGTVSFKSKTTEIVLNDESAHRVKSVYEEFKTEVTALFLAAHSNNLTLLRKLLSVGGDINTRVFRGYATTATVREGHLKVLEVLINGGASQHACEEALMETSYMGRARFSELLMQTHMIRPHVAVHALVSASSRGFVDVVDVLIKHGVDVNAIDRTLLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVKLDMKVKLGAWSWETETGEEFRVGVGLAEAYPITWCAVEYFESTGSILQMLLSHISPNTLHIGRTLLHHAIICNNEKALNILLKNGANVEAPVQTDVHPIHMAARLGSCSILQCLIKGGCDLDSRTKSGDTAVMICVRYKHEKCLKVLASSGADLGLVNSSGHCLASIANSVQWSNVFQRVILDVIRSGKVVKSSNASRFSALLFATRANDIEGVKKLIENGNIDMNEQNENGFSAAMIAAAMGNVEAFRLLLFAGADILELKNKYGLTALNLIDVSQNGEAFQKVMLEFAVKRGCEIEGSNEVNPLHRAARYGAIDIVQKLLKEGNYDVNSFDSQGYTPLMLAAKACRGDMCKLLISFGAKCEVENERHETALSLARENGNGNEAEFLILDEVARRLVLCGGRVKKHTKCGKGSPHSKQLRMVKVAGILRWGKASKRNVVCENAKVGASERFRWNRRKKFDVDEAGIFHVVTTKNKEVHFVCEGGVQMAELWVRGIRLVTREAFFGNTT* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0909 756 SMART ANK_2a 582 611 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 478 507 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 548 578 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 308 337 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 175 204 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 116 145 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 374 403 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 221 250 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 84 113 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 444 474 IPR002110 GO:0005515
Amo20g0909 756 SMART ANK_2a 341 370 IPR002110 GO:0005515
Amo20g0909 756 Gene3D - 527 636 IPR036770 -
Amo20g0909 756 SUPERFAMILY Ankyrin repeat 308 636 IPR036770 -
Amo20g0909 756 Pfam Ankyrin repeats (many copies) 451 499 IPR002110 GO:0005515
Amo20g0909 756 SUPERFAMILY Ankyrin repeat 27 255 IPR036770 -
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat region circular profile. 548 572 - -
Amo20g0909 756 Pfam Ankyrin repeats (3 copies) 533 611 IPR002110 GO:0005515
Amo20g0909 756 Pfam Ankyrin repeats (3 copies) 344 403 IPR002110 GO:0005515
Amo20g0909 756 PANTHER ANKYRIN REPEAT-CONTAINING 8 754 - -
Amo20g0909 756 Gene3D - 394 526 IPR036770 -
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 341 373 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat region circular profile. 582 614 - -
Amo20g0909 756 Gene3D - 169 262 IPR036770 -
Amo20g0909 756 Gene3D - 273 393 IPR036770 -
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 374 406 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 179 207 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 478 510 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 548 572 IPR002110 GO:0005515
Amo20g0909 756 PANTHER ANKYRIN DOMAIN PROTEIN 8 754 - -
Amo20g0909 756 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Amo20g0909 756 ProSiteProfiles Ankyrin repeat region circular profile. 478 505 - -
Amo20g0909 756 ProSiteProfiles Ankyrin repeat region circular profile. 308 337 - -
Amo20g0909 756 Gene3D - 16 168 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0909 Amo-Chr20 15108521 15113906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0909 348 603 Miscellaneous Gene Families AT3G09550 25.962 1.14e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0909 - - gmx:100795638 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0909 20 15108521 15113906 Amo20g0909 20 15108521 15113906 ECH
Amo20g0909 20 15108521 15113906 Amo10g0476 10 4755176 4762759 hybridization