Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1374 Acco04g1827 . Accr8g00862 . Adu10g00704 . . . . . . Ahy20g0979 . Aip10g01024 Alju06g1772 . . . . . . . . . Bisa08g2714 . . . . . . . Dere03g0097 . . Dod04g0603 Enph6g0099 . Glsi02g0096 . . . . Gma18g00077 . . . . . . . . . . . . . . . . Lapu6g00089 . Lasa5g02622 . Lele21g1293 Lele22g1293 . Lele24g1236 . . . . . . . . Mepo3g06228 . . . Mibi09g0877 . Mtr3g2817 . . . Phco2g02964 . Prci4g2072 . . Psa7g1808 Pste7g02389 . . . . . Pumo1g00441 . Pvu1g2686 . Rops11g03728 . Seca6g01715 . Spst1g01904 . . . Sto3g2857 . Tpr2g4684 . Trre5g03116 . Tsu07g02727 . Vian2g03173 . Vifa2g02464 . Vimu6g01525 . Viun1g03445 . Vivi3g03358 . . .
Vvi1g1375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto3g2854 . . . . . . . . . . . . . . . . . . .
Vvi1g1378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1379 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g1060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1371 Chr1 19893130 19896199 +
Vvi Vvi1g1372 Chr1 19913049 19914625 +
Vvi Vvi1g1373 Chr1 19921837 19923437 +
Vvi Vvi1g1374 Chr1 19925624 19929463 -
Acco Acco04g1827 Chr04 29445774 29449436 -
Accr Accr8g00862 Chr8 19754920 19756033 -
Adu Adu10g00704 Chr10 8406412 8410394 +
Ahy Ahy20g0979 Chr20 14162523 14168379 +
Aip Aip10g01024 Chr10 13522469 13527499 +
Alju Alju06g1772 Chr06 32465197 32468874 +
Bisa Bisa08g2714 Chr08 62496329 62500102 -
Dere Dere03g0097 Chr03 4309009 4312552 +
Dod Dod04g0603 Chr04 8675801 8677276 -
Enph Enph6g0099 Chr6 4008104 4011643 +
Glsi Glsi02g0096 Chr02 660313 665213 +
Gma Gma18g00077 Chr18 619464 623262 +
Lapu Lapu6g00089 Chr6 683174 688572 +
Lasa Lasa5g02622 Chr5 493161742 493164799 +
Lele Lele21g1293 Chr21 21041071 21044682 +
Lele Lele22g1293 Chr22 18450584 18454265 +
Lele Lele24g1236 Chr24 16409480 16413145 -
Mepo Mepo3g06228 Chr3 76461516 76466530 +
Mibi Mibi09g0877 Chr09 13763908 13767653 -
Mtr Mtr3g2817 Chr3 42153339 42158196 +
Phco Phco2g02964 Chr2 58511814 58515328 -
Prci Prci4g2072 Chr4 32269856 32274485 +
Psa Psa7g1808 Chr7 130556038 130561687 +
Pste Pste7g02389 Chr7 22647637 22652816 -
Pumo Pumo1g00441 Chr1 6054728 6059758 -
Pvu Pvu1g2686 Chr1 51554748 51559706 -
Rops Rops11g03728 Chr11 70945383 70950615 +
Seca Seca6g01715 Chr6 71804217 71809307 +
Spst Spst1g01904 Chr1 27278968 27282581 +
Sto Sto3g2857 Chr3 33197097 33201207 +
Tpr Tpr2g4684 Chr2 52157635 52162420 +
Trre Trre5g03116 Chr5 26507147 26510709 +
Tsu Tsu07g02727 Chr07 31928329 31933590 +
Vian Vian2g03173 Chr2 52211070 52214695 -
Vifa Vifa2g02464 Chr2 645115098 645118194 +
Vimu Vimu6g01525 Chr6 14357482 14361109 +
Viun Viun1g03445 Chr1 41420214 41425217 -
Vivi Vivi3g03358 Chr3 56612316 56616717 -
Vvi Vvi1g1375 Chr1 19943774 19949502 +
Vvi Vvi1g1376 Chr1 19953835 19957398 +
Vvi Vvi1g1377 Chr1 19961769 19994108 +
Sto Sto3g2854 Chr3 33182405 33184392 +
Vvi Vvi1g1378 Chr1 19997292 19997714 +
Vvi Vvi1g1379 Chr1 20000284 20000706 +
Bva Bva06g01751 Chr06 12162715 12167821 +
Lja Lja4g1060 Chr4 9122397 9126814 +
Vvi Vvi1g1380 Chr1 20003391 20003813 +
Vifa Vifa2g02464 Chr2 645115098 645118194 +