Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1361 ATGAAGTTGAGTCCAAGAGAGGTGGACAAACTGCTTCTTCACAATGCTGGGTTTCTTGCCCAGAAGCGTCTTGCTTCTGGGCTAAGGCTCAATTACACTGAAGCCGTAGCCCTCATTGCCTCACAGATTTTGGCTTTTGTTCGTGAGGGTGAGAAGACTGTGGCGGAATTGATGGACATAGGGAAACAACTTTTGGGAAGGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAGGTTGAGGGAACATTTCCTGATGGGACAAAGTTAGTAACAGTTCATGATGCCATTGCCAGTGAAAATGGAAATCTGGATTTAGCTTTACATGGTTCTTTTCTTCCAGTTCCTTCAGTAGACAAGTTTCCTGACATGGAAGATGATAGAATTCCTGGTGAAATAAGATATGGAGGTGGAACTATTATGCTCAACTCTTGCAGGAAAGCAATAGTCCTCAGAGTCACCAACACTGGAGACAGGCCGATTCAGGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTACACGATTTGAGCCAGGGGAAACAAAAAGAGTCTCACTTGTAAGGATTGGAGGTAAGCAAGTGATCAGAGGAGGAAATTGCATTATCGACGGTCCTGTCGATGATACTAATATCACAGCTGTGATGGAATCCGAAAGCATGGTGAGATTTGGGCATTCAGAAGAAGCACATGTCAGTGAAGGTGTCATTGGAGAAGATCCTGATTTAGCAATAAGAATGTCTCATGAGGCATATGCTAACATGTATGGCCCCACCACTGGTGACAAAATTCGGCTTGGTGACACTGAATTATATGCTGAAATTGAAAGTGATTTTGCTGTCTATGGTGATGAATGTGTATTTGGAGGGGGAAAAGTTATAAGGGATGGAATGGGGCAGGCTTGTATGTATGCAGCAGCTGAATGTGTGGATACTGTCATCACAAATGCTGTGGTCATTGACTACACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGTCTTATTGTTTCTCTTGGAAAAGCAGGCAACCCAGATATTATGCATGGTGCACACATGATCATTGGGGTTAGCACCGAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGGCATCACAACATTAGTGGGCGGTGGAACGGGACCTGCTGATGGAACTCGTGCAACTACTTGTACGCCAGCAGCCTCACATATGAAATTTATGCTGCAATCAACTGATGACCTGCCACTGAATTTTGGTTTCACAGGAAAAGGGAACAGTGCCAAACCAGACGGGCTACATGAAATAATTAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGGTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGTGAAGGTGCTGGTGGTGGTCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAAAATGTTCTACCCTCATCCACAAACCCAACACGGCCTTTCACTTCCAATACCATAGATGAGCACCTTGACATGCTGATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGGTGATAATTAGAACCTGGCAAACTGCTCACAAGATGAAGTTACAAAGAGGATCACTTGATGCTAGTGGAGTGGATAATGACAACCTCCGAATTAAACGATACATTGCAAAATATACTATAAATCCTGCAATAGCTAATGGGTTTTCACGATTTGTTGGCTCCATTGAGGTGGGGAAGGTGGCTGATCTTGTTCTCTGGAATCCATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGGTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGGTTGCTGCAGAATGTGGAATAAAAACCCATTATGGACTCACAAAGAGGGTGGAAGCTGTTGGCAATGTGAGGAGACTAACCAAACTTGATATGAAGCTCAATGATGCTCTTCCTGTGATCACGGTGGATCCAGAGACTTACACAGTGACAGCAGATGGTGTGACTCTAAGCTGCCCTGCTGCCACTACAGTTCCCCTTTCTCGGAATTACTTCCTCTTTTAG 2508 0.4466 MKLSPREVDKLLLHNAGFLAQKRLASGLRLNYTEAVALIASQILAFVREGEKTVAELMDIGKQLLGRRQVLPAVPHLLHTVQVEGTFPDGTKLVTVHDAIASENGNLDLALHGSFLPVPSVDKFPDMEDDRIPGEIRYGGGTIMLNSCRKAIVLRVTNTGDRPIQVGSHYHFIEVNPALVFDRRKAHGMRLNIPAGTATRFEPGETKRVSLVRIGGKQVIRGGNCIIDGPVDDTNITAVMESESMVRFGHSEEAHVSEGVIGEDPDLAIRMSHEAYANMYGPTTGDKIRLGDTELYAEIESDFAVYGDECVFGGGKVIRDGMGQACMYAAAECVDTVITNAVVIDYTGIFKADIGIKDGLIVSLGKAGNPDIMHGAHMIIGVSTEVIAGEGMIVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPADGTRATTCTPAASHMKFMLQSTDDLPLNFGFTGKGNSAKPDGLHEIIRAGAMGLKLHEDWGTTPAAIDNCLTVAEQYDIQVNIHTDTLNESGFVEHTIAAFKDRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDIPEDVAFAESRIRAETIAAEDILHDMGAISIIASDSQAMGRIGEVIIRTWQTAHKMKLQRGSLDASGVDNDNLRIKRYIAKYTINPAIANGFSRFVGSIEVGKVADLVLWNPSFFGAKPEMVIKGGVIAWANMGDPNASIPTPEPVMMRPMFGAFGKAGSANSIAFVSKVAAECGIKTHYGLTKRVEAVGNVRRLTKLDMKLNDALPVITVDPETYTVTADGVTLSCPAATTVPLSRNYFLF* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1361 835 CDD Urease_beta 132 231 IPR002019 GO:0035550|GO:0043419
Vvi1g1361 835 SUPERFAMILY Urease, beta-subunit 132 260 IPR036461 -
Vvi1g1361 835 SUPERFAMILY Metallo-dependent hydrolases 397 835 IPR032466 -
Vvi1g1361 835 Gene3D Urease, beta subunit 149 268 IPR036461 -
Vvi1g1361 835 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Vvi1g1361 835 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Vvi1g1361 835 Pfam Amidohydrolase family 393 721 IPR006680 GO:0016787
Vvi1g1361 835 ProSitePatterns Urease nickel ligands signature. 395 408 IPR029754 GO:0016151
Vvi1g1361 835 FunFam Urease subunit alpha 4 124 - -
Vvi1g1361 835 Pfam Urease alpha-subunit, N-terminal domain 270 387 IPR011612 -
Vvi1g1361 835 CDD Urease_alpha 270 834 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 Hamap Urease subunit alpha [ureC]. 269 835 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Vvi1g1361 835 PRINTS Urea amidohydrolase (urease) protein signature 602 618 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 PRINTS Urea amidohydrolase (urease) protein signature 695 708 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 PRINTS Urea amidohydrolase (urease) protein signature 563 580 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 PRINTS Urea amidohydrolase (urease) protein signature 669 684 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 SUPERFAMILY Composite domain of metallo-dependent hydrolases 691 745 IPR011059 GO:0016810
Vvi1g1361 835 PANTHER UREASE 1 835 - -
Vvi1g1361 835 PIRSF Urease 1 835 IPR008221 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Vvi1g1361 835 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Vvi1g1361 835 NCBIfam urease subunit alpha 270 835 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550|GO:0043419
Vvi1g1361 835 Gene3D - 397 816 - -
Vvi1g1361 835 ProSiteProfiles Urease domain profile. 397 835 IPR017951 GO:0006807|GO:0009039|GO:0016151
Vvi1g1361 835 NCBIfam urease subunit gamma 1 101 IPR002026 GO:0016151|GO:0043419
Vvi1g1361 835 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Vvi1g1361 835 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 445 IPR011059 GO:0016810
Vvi1g1361 835 ProSitePatterns Urease active site. 585 601 IPR017950 GO:0009039
Vvi1g1361 835 NCBIfam urease subunit beta 132 232 IPR002019 GO:0035550|GO:0043419
Vvi1g1361 835 Gene3D Urease, subunit C, domain 1 269 748 IPR011059 GO:0016810
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1361 Vvi-Chr1 19784818 19799018 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1361 K01427 - vvi:100263023 1674.45