Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0768 Acco08g0261 Accr13g00275 . . . . . . Alju10g0274 . . Apr3g1383 Arst3g00229 . Bisa02g3714 . . . Dere07g0853 . Enph8g0911 Glsi04g0327 . Gma11g01363 . Gso11g1269 . . . . . . Lapu11g00483 . . . . . Lja3g0822 . . . Mibi07g0270 . . Phco9g00845 Prci6g0393 . . . . . Spst11g01383 . Sto12g0273 . . . . . . . . .
Pvu11g0769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0770 Acco08g0262 Accr13g00277 . Aed5g0497 . . . . Alju10g0276 . . . . . Bisa02g3709 . . Cca04g00760 Dere07g0849 . . Glsi04g0329 . Gma11g01364 . Gso11g1270 . . . . . . . . . . . . . . . . . . . Phco9g00846 Prci6g0395 . . Pumo11g01489 . . Spst11g01382 Ssu3g2525 Sto12g0276 . . . Vian5g01204 . Vimu5g01960 Viun11g01979 Vivi5g02415 Vra2g0701
Pvu11g0771 . . . Aed5g0498 . . . . . . . Apr3g1382 . . . . . Cca04g00761 . . . . . . . Gso11g1536 . . . . . . Lapu11g00482 . . . . . Lja3g0823 . . . . . . Phco9g00847 . . . Pumo11g01488 Rops3g00922 Seca4g04060 Spst11g01381 . . . . . Vian5g01203 . Vimu5g01959 Viun11g01978 . Vra2g0702
Pvu11g0772 . . . Aed5g0499 . . . . . . . Apr3g1381 . . . . . Cca04g00762 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g00848 . . . Pumo11g01487 . Seca4g09191 . Ssu3g2524 . . . . . . . . . .
Pvu11g0773 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0774 . . . Aed5g0500 . . . . . . . . . . . . . Cca04g00763 . . . . Gma12g00620 Gma11g01662 Gso12g0573 Gso11g1535 . . . . . . . . . . . . . Mal7g2120 . . . . . . . . . Pumo11g01486 Rops3g00923 Seca4g09193 Spst11g01379 . . . . . Vian5g01202 . Vimu5g01958 Viun11g01977 . Vra2g0703
Pvu11g0775 . . . . Aev04g3028 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g00481 . . . . . Lja3g0824 . . . . . . Phco9g00849 . . . . . . . . . . . . . . . . . .
Pvu11g0776 . . Adu03g00177 Aed5g0501 . . . Aip03g00375 . . . Apr3g1380 . . . . Car06g03504 Cca04g00767 . . . . . . . . . . . . . . . . . . . . . Mal7g2118 . . . . Phac11g00057 Phco9g00850 . Psa7g4425 . . Rops3g00925 Seca4g04072 Spst11g01378 . . . . . Vian5g01196 . Vimu5g01957 Viun11g01973 . Vra2g0705
Pvu11g0777 . . . Aed5g0174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0768 Chr11 6806835 6807470 -
Acco Acco08g0261 Chr08 1948904 1954409 -
Accr Accr13g00275 Chr13 2679704 2680420 -
Alju Alju10g0274 Chr10 2122573 2126010 -
Apr Apr3g1383 Chr3 28295863 28296857 +
Arst Arst3g00229 Chr3 1603209 1605286 +
Bisa Bisa02g3714 Chr02 90264723 90265466 +
Dere Dere07g0853 Chr07 12022590 12023432 +
Enph Enph8g0911 Chr8 17530885 17531721 +
Glsi Glsi04g0327 Chr04 2107209 2107952 -
Gma Gma11g01363 Chr11 11868589 11869653 -
Gso Gso11g1269 Chr11 11755066 11756691 -
Lapu Lapu11g00483 Chr11 8056887 8057762 +
Lja Lja3g0822 Chr3 8338835 8339960 +
Mibi Mibi07g0270 Chr07 3415578 3416312 -
Phco Phco9g00845 Chr9 6570497 6571372 -
Prci Prci6g0393 Chr6 2507098 2508369 -
Spst Spst11g01383 Chr11 38247491 38248369 -
Sto Sto12g0273 Chr12 1669907 1670956 -
Pvu Pvu11g0769 Chr11 6812493 6817167 -
Pvu Pvu11g0770 Chr11 6839515 6845520 -
Acco Acco08g0262 Chr08 1959617 1965423 +
Accr Accr13g00277 Chr13 2691211 2697413 +
Aed Aed5g0497 Chr5 3633391 3636723 -
Alju Alju10g0276 Chr10 2132622 2138347 +
Bisa Bisa02g3709 Chr02 90153343 90164769 -
Cca Cca04g00760 Chr04 7624547 7631413 -
Dere Dere07g0849 Chr07 11978295 11984286 -
Glsi Glsi04g0329 Chr04 2117006 2123965 +
Gma Gma11g01364 Chr11 11870973 11877687 -
Gso Gso11g1270 Chr11 11757702 11764288 -
Phco Phco9g00846 Chr9 6572620 6578298 -
Prci Prci6g0395 Chr6 2527524 2533384 +
Pumo Pumo11g01489 Chr11 45652064 45679092 +
Spst Spst11g01382 Chr11 38239870 38245891 -
Ssu Ssu3g2525 Chr3 77776744 77783069 +
Sto Sto12g0276 Chr12 1676311 1680710 +
Vian Vian5g01204 Chr5 34520738 34526206 +
Vimu Vimu5g01960 Chr5 31413359 31419243 +
Viun Viun11g01979 Chr11 35454535 35460221 +
Vivi Vivi5g02415 Chr5 102315646 102320488 -
Vra Vra2g0701 Chr2 5971869 5978214 -
Pvu Pvu11g0771 Chr11 6848513 6849186 -
Aed Aed5g0498 Chr5 3639797 3640681 -
Apr Apr3g1382 Chr3 28291492 28292609 +
Cca Cca04g00761 Chr04 7634914 7635997 -
Gso Gso11g1536 Chr11 17823777 17824983 -
Lapu Lapu11g00482 Chr11 8054210 8055387 +
Lja Lja3g0823 Chr3 8341125 8342312 -
Phco Phco9g00847 Chr9 6580990 6583233 -
Pumo Pumo11g01488 Chr11 45645490 45646526 +
Rops Rops3g00922 Chr3 11794322 11795212 -
Seca Seca4g04060 Chr4 72365721 72369555 -
Spst Spst11g01381 Chr11 38237740 38238615 -
Vian Vian5g01203 Chr5 34487695 34488573 +
Vimu Vimu5g01959 Chr5 31409342 31410666 +
Viun Viun11g01978 Chr11 35440654 35441773 +
Vra Vra2g0702 Chr2 5980731 5981883 -
Pvu Pvu11g0772 Chr11 6861990 6863141 -
Aed Aed5g0499 Chr5 3641545 3647887 +
Apr Apr3g1381 Chr3 28282035 28290030 +
Cca Cca04g00762 Chr04 7638546 7645554 +
Phco Phco9g00848 Chr9 6583568 6598324 -
Pumo Pumo11g01487 Chr11 45637064 45644188 +
Seca Seca4g09191 Chr4 217937282 217948286 +
Ssu Ssu3g2524 Chr3 77753847 77761643 +
Pvu Pvu11g0773 Chr11 6863158 6868200 -
Pvu Pvu11g0774 Chr11 6916242 6918551 +
Aed Aed5g0500 Chr5 3648533 3649417 +
Cca Cca04g00763 Chr04 7647589 7648595 +
Gma Gma12g00620 Chr12 5176799 5177641 -
Gma Gma11g01662 Chr11 17961400 17962411 -
Gso Gso12g0573 Chr12 5143393 5144511 -
Gso Gso11g1535 Chr11 17821464 17822629 -
Mal Mal7g2120 Chr7 75481246 75482124 -
Pumo Pumo11g01486 Chr11 45635343 45636279 -
Rops Rops3g00923 Chr3 11803535 11804425 -
Seca Seca4g09193 Chr4 217955110 217958946 -
Spst Spst11g01379 Chr11 38227492 38229969 -
Vian Vian5g01202 Chr5 34484189 34485040 -
Vimu Vimu5g01958 Chr5 31407537 31408388 -
Viun Viun11g01977 Chr11 35438511 35439518 +
Vra Vra2g0703 Chr2 5982712 5983989 +
Pvu Pvu11g0775 Chr11 6919951 6921226 +
Aev Aev04g3028 Chr04 30013540 30019774 -
Lapu Lapu11g00481 Chr11 8051623 8052768 +
Lja Lja3g0824 Chr3 8344703 8345953 -
Phco Phco9g00849 Chr9 6601521 6602375 +
Pvu Pvu11g0776 Chr11 6958334 6960082 +
Adu Adu03g00177 Chr03 1603287 1604162 -
Aed Aed5g0501 Chr5 3651088 3651939 +
Aip Aip03g00375 Chr03 3560354 3561256 -
Apr Apr3g1380 Chr3 28275289 28280756 -
Car Car06g03504 Chr06 65920221 65921111 -
Cca Cca04g00767 Chr04 7670216 7671088 +
Mal Mal7g2118 Chr7 75446123 75447004 -
Phac Phac11g00057 Chr11 410882 416978 -
Phco Phco9g00850 Chr9 6604079 6604951 +
Psa Psa7g4425 Chr7 363750841 363756380 +
Rops Rops3g00925 Chr3 11804314 11823462 -
Seca Seca4g04072 Chr4 72505183 72506061 -
Spst Spst11g01378 Chr11 38224142 38225119 +
Vian Vian5g01196 Chr5 34451942 34452793 +
Vimu Vimu5g01957 Chr5 31405760 31406322 -
Viun Viun11g01973 Chr11 35413239 35414396 -
Vra Vra2g0705 Chr2 6014906 6016003 -
Pvu Pvu11g0777 Chr11 6971820 6974216 -
Aed Aed5g0174 Chr5 1243370 1257979 +