Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04060 ATGATGAAGAAGCAATCTCTGTTATGCATCTCACTTGCATTACTAGTTTCTCTCTTGTACTCCACTACCACTTTAGCCCAATTATCCCCTGCTTCTGCACCTGCCCAACCTCCTCCAACTCCAACCCCGCCTGCTGCATCCCCTAAACCATTGGTCCCCTCATTGCCACAATCACCAAGTGATTCCACCCCTGACACTCCAGCAGCCGTTGACATAGTTGGAATCCTCAGAAAGGCCAAGTCATTCAATGTCCTAATCAGACTGATGAAAACCACCCAGTTGATAAACCAACTAAATTCACAGCTCTTAACTACCAAATCAGGTGGCATTACCATTCTTGCACCTGATGACAGTGCCTTCTCTGAACTCAAAGCAGGATTCCTCAACTCTCTCTCTGATGGACAAAAGCTTGAACTTTTACAGTTTCACGTTATTTCTGATTATGTCTCTAGCTCAAACTTTGATACTCTGACAAACCCAGTGCGAACACTTGCCGGAGCTAAACCTGGAAAGGTGGAATTGAATGTGATCAGTTACGGTGGCAGTGTGAACATCTCAACAGGGGAAGTTAACACAACCATCAATGGTATCATATACACAGATAAGCATCTTGCTATCTATAAGGTGGGAAAGGTTCTTCTTCCAATGGACTTCTTCGCAGTTGCTAAGGCACCAGCAAAGGCTCCATCTTTGGCACCAGAACCTTCAGCAAAGGCACCAAAACCAGATAAGGAGAAGACATTGTCCCCAGATTCCTCAGGATCATCTGAGATGAATCCCACAAATGAGAACTCTGGCACTCTGACAATCAATGTCATAACCCTCTGTTCCCTGAGAACAAGCACATACCCTTTAAGCACAAAAATGAAGATGCAACAATCTCTCTTCTCTGCCTCACTTGTACTGATAATCACCTTCTTCTACACCACATCAGCCCAACAGTCACCAGTTCAGGCTCCAGCAGCATCTCCTTCAATCCCAATATTACCACAATCACCCCCTGCTTCTCCACCCGGATTAATGAATACCGTTCCCCTTGTACCCGTTTCACCCAATGCAGCCCCTTCACCCGCCATTCCCAAAGCTCCCACCATTGACATTGTTCAAATCCTCAGTAAGGCCAAAAGATTCTCCGTCCTCATTCGCCTACTGAAGACAACCCAATTGATAAACCAACTGAACTCTCAACTCGTGACTTCTGGGTCAGGTGGATTGACCCTTTTCGCCCCACAGGACAGTGCCTTTTCGAAGCTAAAACCAGGTTTCCTCAACTCTCTCACTGACAGGCAAAAGGTCGAACTTTTACAATTCCACACACTTTCTTCCTTCATTTCAATCTCCAATTTCGATACTCTGACAAACCCTGTTCAGACCCAAGCCGGTGACGACCCCAAAAGGCTTCAACTTAACGTCACCACTTACGGCGGCGCCCAAGTGAGCATGACCACCGGTGCCGTTAATGCCACCGTTACCGGCACGGTGTACACGGACAACAAGCTTGCGATTTATGAGGTGGACAAAGTGCTTCTTCCACTTGACGTTGTCCTTCCTAAGCCTAAGGCTCCGTCACCGTCACCGTCACCGTCAAAATCTGATGGAAAGAAGAAATCATCTCCAGACAAAAGTGGCGATGGTAACAAAAATACCAATGATGATGATGATGGTGCCGTTCCGGTGGACAGTTCTGAAGGTTCGGTGAGTTTCAGCGGACATGTTATGTGGATGCCTTTTGTTGTAGGACTCGCTTTTGTGGGTGGAAGCATGGTATGA 1770 0.4678 MMKKQSLLCISLALLVSLLYSTTTLAQLSPASAPAQPPPTPTPPAASPKPLVPSLPQSPSDSTPDTPAAVDIVGILRKAKSFNVLIRLMKTTQLINQLNSQLLTTKSGGITILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTINGIIYTDKHLAIYKVGKVLLPMDFFAVAKAPAKAPSLAPEPSAKAPKPDKEKTLSPDSSGSSEMNPTNENSGTLTINVITLCSLRTSTYPLSTKMKMQQSLFSASLVLIITFFYTTSAQQSPVQAPAASPSIPILPQSPPASPPGLMNTVPLVPVSPNAAPSPAIPKAPTIDIVQILSKAKRFSVLIRLLKTTQLINQLNSQLVTSGSGGLTLFAPQDSAFSKLKPGFLNSLTDRQKVELLQFHTLSSFISISNFDTLTNPVQTQAGDDPKRLQLNVTTYGGAQVSMTTGAVNATVTGTVYTDNKLAIYEVDKVLLPLDVVLPKPKAPSPSPSPSKSDGKKKSSPDKSGDGNKNTNDDDDGAVPVDSSEGSVSFSGHVMWMPFVVGLAFVGGSMV. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04060 589 ProSiteProfiles FAS1/BIgH3 domain profile. 364 509 IPR000782 -
Seca4g04060 589 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 295 578 IPR045003 -
Seca4g04060 589 Gene3D FAS1 domain 364 511 IPR036378 -
Seca4g04060 589 MobiDBLite consensus disorder prediction 517 564 - -
Seca4g04060 589 MobiDBLite consensus disorder prediction 229 265 - -
Seca4g04060 589 MobiDBLite consensus disorder prediction 32 57 - -
Seca4g04060 589 MobiDBLite consensus disorder prediction 29 66 - -
Seca4g04060 589 SUPERFAMILY FAS1 domain 358 512 IPR036378 -
Seca4g04060 589 SMART fasc_3 111 216 IPR000782 -
Seca4g04060 589 SMART fasc_3 406 512 IPR000782 -
Seca4g04060 589 Pfam Fasciclin domain 81 215 IPR000782 -
Seca4g04060 589 Pfam Fasciclin domain 376 511 IPR000782 -
Seca4g04060 589 SUPERFAMILY FAS1 domain 64 216 IPR036378 -
Seca4g04060 589 FunFam Fasciclin-like arabinogalactan protein 11 350 511 - -
Seca4g04060 589 MobiDBLite consensus disorder prediction 533 554 - -
Seca4g04060 589 FunFam Fasciclin-like arabinogalactan protein 11 54 215 - -
Seca4g04060 589 Gene3D FAS1 domain 55 215 IPR036378 -
Seca4g04060 589 ProSiteProfiles FAS1/BIgH3 domain profile. 69 204 IPR000782 -
Seca4g04060 589 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04060 Seca-Chr4 72365721 72369555 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04060 - - gmx:100776667 365.925