Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00846 ATGAGAGCATCACAGACTCTGTTCCTTTTGCTTTGGTTCTTCTGCATTTATGCCCCTACTTCGTTTTCCACAAATGTCACGTACGACCATAGAGCATTGGTCATTGATGGCAAGCGCCGAGTTTTGGTCTCTGGTTCTATCCATTACCCTCGTAGCACTCCAGAGATGTGGTCAGACATCATTCAAAAGTCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATAATTTTGAAGGTAGGGGCGATTTGGTTAAATTTGTGAAGACAGTAGCAGCAGCAGGCCTATATGTGCATCTACGGATTGGTCCATACGCATGTGCTGAATGGAACTACGGTGGTTTCCCTCTTTGGCTGCATTTTATTCCGGGAATTCAGTTCCGAACTGATAACAAACCATTTGAGGAAGAAATGAAGCGGTTCACCGCTAAGATTGTGGATATGATGAAGCAAGAGAACCTCTATATGTCACAGGGAGGACCTATAATTTTGTCTCAGATAGAAAATGAGTATGGGAACATTGATGATCATTATGGTCCAGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGATCCAATTATTAACACGTGCAATGGATTTTACTGTGACCAATTCCAACCAAATTCTAATGCAAAACCAAAAATATGGACTGAGGGTTATACTGGATGGTTTCTTGCATTTGGCGATGCTGTACCTCACAGACCTGTGGAAGATCTTGCATTTGCTGTAGCACGTTTTTTCCAACGAGGTGGAACTTTTAACAATTACTATATGGTAATGCAACCTTACATGATGTTTAAGGCTTTTTTACCTTTCAGCTATTCTAGTTATCTAGGAAATGAGCTTAAGCCACAACTTTTTTGGTTGCTTCCGAAACAGTACCATGGAGGGACGAACTTTGGCCGGGCTTCTGGTGGGCCTTTCGTTGCTAGTAGTTATGACTATGATGCACCAATTGATGAATATGGAATTCTTAGACAGCCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCGTAAAACTTTGTGAAGAAGCTCTCACAGCTACTGATCCAACAATTACATCTCTTGGACCAAATATAGAGGTTGCAGTATACAAGACAGGAGCTGTATGTTCCGCTTTCCTTGCCAACATAGCCACATCTGATGCAAAAGTGGCCTTCAATGGAAATCCATATCACCTGCCCGGATGGTCTGTCAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCGTCTATGATTTCAAGCTTTACAAGTGAATCTTTAAAAGAAGAGGTTGGCTCGTTGGATGATTCTGACTCAGGCGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGGTTACTGGAGCAAATAAATACAACAGCTGATAGAAGTGACTACTTGTGGTACTCATTAAGCATTGATCTTGATACTGGTGCTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCATGCTTTCATAAATGGGAAACTTGCAGGGAGTGGAAGGGGCAACCATGAGAAAGCTAACGTCAAAGTAGACATCCCCATCACACTACTGGCTGGGAAGAACACAATTGATCTTCTAAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATCACTGGCCCTGTGATATTGAAAGGTTTGAAAAATGGCAGCTCTCTTGATCTGTCCTCCCAGAAGTGGACATATCAGATTGGCCTTAAAGATGAAGATTTAGGTCCATCTGGTGGCAGTTCTGGACAGTGGAATTCACAATCTACCCTACCTGTACACCAACCGTTGATTTGGTACAAGACAAATTTCCTTGCTCCCTCTGGTAGCAATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGGCGATACTGGCCTACGTATGCCTCTCCGAGTGGTGGTTGTACTGATTCGTGCAATTATAGAGGGGCCTATCAAGCATCCAAATGTCTCAAGAACTGTGGAAAGCCATCACAGATATTATACCATGTACCACGATCATGGTTACGACCTAAAAGCAACACACTTGTTTTGTTTGAGGAAAGTGGAGGCAACCCTAAGCAAATCACTTTTGCTACAAAACAGATGGGAAGCGTGTGTTCACATGTATCTGAATCTCACCCTCCACCTGTAGACTTGTGGTATTCAGATGCAGAATCAGAAAGAAAAGTAGGGCCTGTAATGTTACTGGAGTGCCCTTATCCTAATCAGGTGATCTCTTCCATTAAATTTGCCAGTTTTGGAACACCTCATGGGACTTGTGGGAACTTCAAACATGGACGCTGCAGCAGCAATAAGGCTCTATCCATTGTGCAGAAGGGCTGCATTGGATCAAGCAGTTGTAGAATTGGACTATCAATTAATACATTCGGAGATTCATGTAAAGGAGTACCAAAGAGTTTAGCTGTTGAAGCTTCTTGTTCATAA 2622 0.4298 MRASQTLFLLLWFFCIYAPTSFSTNVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWSDIIQKSKDGGLDVIETYVFWNLHEPVRGQYNFEGRGDLVKFVKTVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEEEMKRFTAKIVDMMKQENLYMSQGGPIILSQIENEYGNIDDHYGPAAKSYIKWAASMATSLDTGVPWVMCQQLDAPDPIINTCNGFYCDQFQPNSNAKPKIWTEGYTGWFLAFGDAVPHRPVEDLAFAVARFFQRGGTFNNYYMVMQPYMMFKAFLPFSYSSYLGNELKPQLFWLLPKQYHGGTNFGRASGGPFVASSYDYDAPIDEYGILRQPKWGHLKDLHKAVKLCEEALTATDPTITSLGPNIEVAVYKTGAVCSAFLANIATSDAKVAFNGNPYHLPGWSVSILPDCKNVVLNTAKINSASMISSFTSESLKEEVGSLDDSDSGGWSWISEPIGISKADSFSKFGLLEQINTTADRSDYLWYSLSIDLDTGAQTVLHIESLGHALHAFINGKLAGSGRGNHEKANVKVDIPITLLAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSSLDLSSQKWTYQIGLKDEDLGPSGGSSGQWNSQSTLPVHQPLIWYKTNFLAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYASPSGGCTDSCNYRGAYQASKCLKNCGKPSQILYHVPRSWLRPKSNTLVLFEESGGNPKQITFATKQMGSVCSHVSESHPPPVDLWYSDAESERKVGPVMLLECPYPNQVISSIKFASFGTPHGTCGNFKHGRCSSNKALSIVQKGCIGSSSCRIGLSINTFGDSCKGVPKSLAVEASCS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00846 873 Pfam Glycosyl hydrolases family 35 33 292 IPR031330 -
Phco9g00846 873 Pfam Glycosyl hydrolases family 35 327 372 IPR031330 -
Phco9g00846 873 Gene3D - 455 603 - -
Phco9g00846 873 SUPERFAMILY Galactose-binding domain-like 617 782 IPR008979 -
Phco9g00846 873 Pfam Galactose binding lectin domain 795 872 IPR000922 GO:0030246
Phco9g00846 873 Gene3D - 784 873 IPR043159 -
Phco9g00846 873 FunFam Beta-galactosidase 451 604 - -
Phco9g00846 873 FunFam Beta-galactosidase 22 313 - -
Phco9g00846 873 SUPERFAMILY (Trans)glycosidases 24 377 IPR017853 -
Phco9g00846 873 SUPERFAMILY Galactose-binding domain-like 433 605 IPR008979 -
Phco9g00846 873 CDD Gal_Rha_Lectin_BGal 785 872 - -
Phco9g00846 873 FunFam Beta-galactosidase 625 765 - -
Phco9g00846 873 Pfam Beta-sandwich domain in beta galactosidase 383 449 IPR041392 -
Phco9g00846 873 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Phco9g00846 873 ProSiteProfiles SUEL-type lectin domain profile. 787 873 IPR000922 GO:0030246
Phco9g00846 873 PANTHER BETA-GALACTOSIDASE RELATED 18 802 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 Gene3D - 326 449 - -
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 676 692 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 340 356 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 320 335 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 649 663 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Phco9g00846 873 FunFam Beta-galactosidase 325 450 - -
Phco9g00846 873 Gene3D - 605 765 - -
Phco9g00846 873 Gene3D Glycosidases 18 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00846 Phco-Chr9 6572620 6578298 Proximal