Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01960 ATGAGAGCATCACAGACTCTGTTTCTTTTGCTTTGGTTCTTCTGCATTTATGCCTCTACTTCGTTTTCCGCAAATGTCACTTACGACCACAGAGCATTGGTCATTGATGGCAAGCGCCAAGTCTTGGTCTCTGGTTCTATCCATTACCCTCGTAGCACTCCAGAGATGTGGCCAGACCTCATTCAAAAGTCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCAAGGCCAGTATAATTTTGAAGGTAGGGCAGATTTGGTTAAATTTGTGAAGACAGTAGCAGCAGCAGGCCTATATGTACATCTCCGGATTGGTCCATACGCATGTGCTGAATGGAACTACGGCGGTTTCCCTCTCTGGCTACATTTTATACCGGGAATTCACTTCCGAACTGATAACAAACCATTTGAGGAAGAAATGAAACGGTTCACTGCTAAAATTGTAGACATGATGAAGCAAGAGAACCTCTATATGTCACAGGGAGGACCTATTATTTTGTCTCAGATTGAAAATGAGTATGGGAACATTGATGCGGATTATGGTCCAGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGATCCAATTATTAACACATGCAATGCATTTTACTGTGACCAATTCCAACCGAATTCTAAGGCAAAACCAAAAATATGGACTGAGGGTTATACTGGATGGTTTCTTGCATTTGGTGATGCTTTGCCTCACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGAGGGGGAACTTTCAACAATTACTATATGTACCATGGAGGGACAAACTTTGGCCGGGCTTCTGGTGGGCCTTTTGTTGCTAGTAGTTATGATTATGATGCACCAATTGATGAATATGGAATTATTAGACAGCCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCATTAAACTTTGTGAAGAAGCACTGATAGCTACCGATCCAACAATTACATCTCTTGGACCAAATATAGAGGTTGCAGTTTACAAGACTGGAGCTGTGTGTTCCGCTTTCCTTGCCAACATTGCCACATCTGATGCAAAAGTGACCTTCAATGGAAATTCATATCACCTGCCCGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTGTGATTTCAAGCTTTACAACTGAATCTTTAAAAGAAGATGTTGGCTCGTTGGATGATTCTTACTCGGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGGTTGCTGGAGCAAATAAATACAACTGGTGATAGAAGTGATTATTTGTGGTACTCATTAAGCATTGATCTTGATACTAGTACTCAAGCTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCGTGCTTTCATAAATGGGAAACTTGCAGGGAGTGGAATGGGCAACCATGAGAAAGCTAACGTCAAAGTAGACATCCCCATCACTCTAGTGGCTGGGAAGAATACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATCACTGGCCCTGTGATATTAAAAGGTTTGAAAAATGGCAGCTCTCTTGATCTGTCCTCCCATATGTGGACATATCAGATTGGTATTAAAGGTGAAGATTTAGGTCCATCTGGTGGCAGTTCTGGACAGTGGAATTCACAATCTACCCTACCTGTACACCAACCCTTCATTTGGTACAAGACAAACTTCGTTGCTCCCTCTGGTAGCAATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGACGATACTGGCCTACGTATGCCTCTCCGAGCGGTGGTTGTACTGATTCGTGCAATTATAGAGGGTCCTATCAAGCATCCAAATGCCTCCAGAACTGTGGAAAGCCATCACAGACATTATACCATGTACCACGATCATGGTTACGACCTCAAGGCAACACACTAGTATTGTTTGAGGAAAGTGGAGGCAACCCTAAGCAAATCAGTTTTGCTACAAAACAGATGGGAAGCGTATGTTCTCATGTATCTGAATCTCACCCTCCACCGGTAGACTTATGGAATTCTGATGCAGAATCAGGAAGAAAAGTAGGACCTGTACTGTTACTGGAGTGCCCTTATCCTAATCAGGTCATCTCTTCCATTAAATTTGCTAGTTTTGGAACACCTCAGGGAAATTGTGGAAACTTCAAACACGGACGCTGCAGCAGCAATAAGGCTCTATCCATTGTGCAGAAGGACTGCATTGGATCAAGCAGTTGTAGAATTGAACTATCAATTAATACGTTCGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAA 2514 0.4304 MRASQTLFLLLWFFCIYASTSFSANVTYDHRALVIDGKRQVLVSGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFVKTVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIHFRTDNKPFEEEMKRFTAKIVDMMKQENLYMSQGGPIILSQIENEYGNIDADYGPAAKSYIKWAASMATSLDTGVPWVMCQQLDAPDPIINTCNAFYCDQFQPNSKAKPKIWTEGYTGWFLAFGDALPHRPVEDLAFAVARFFQRGGTFNNYYMYHGGTNFGRASGGPFVASSYDYDAPIDEYGIIRQPKWGHLKDLHKAIKLCEEALIATDPTITSLGPNIEVAVYKTGAVCSAFLANIATSDAKVTFNGNSYHLPAWSVSILPDCKNVVLNTAKINSASVISSFTTESLKEDVGSLDDSYSGWSWISEPIGISKADSFSKFGLLEQINTTGDRSDYLWYSLSIDLDTSTQAVLHIESLGHALRAFINGKLAGSGMGNHEKANVKVDIPITLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSSLDLSSHMWTYQIGIKGEDLGPSGGSSGQWNSQSTLPVHQPFIWYKTNFVAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYASPSGGCTDSCNYRGSYQASKCLQNCGKPSQTLYHVPRSWLRPQGNTLVLFEESGGNPKQISFATKQMGSVCSHVSESHPPPVDLWNSDAESGRKVGPVLLLECPYPNQVISSIKFASFGTPQGNCGNFKHGRCSSNKALSIVQKDCIGSSSCRIELSINTFGDPCKGVAKSLAVEASCA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01960 837 Gene3D - 753 837 IPR043159 -
Vimu5g01960 837 Gene3D - 678 732 - -
Vimu5g01960 837 Gene3D - 582 662 - -
Vimu5g01960 837 CDD Gal_Rha_Lectin_BGal 754 836 - -
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 PANTHER BETA-GALACTOSIDASE RELATED 18 777 IPR001944 GO:0004553|GO:0005975
Vimu5g01960 837 FunFam Beta-galactosidase 22 341 - -
Vimu5g01960 837 SUPERFAMILY Galactose-binding domain-like 581 745 IPR008979 -
Vimu5g01960 837 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
Vimu5g01960 837 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Vimu5g01960 837 ProSiteProfiles SUEL-type lectin domain profile. 751 837 IPR000922 GO:0030246
Vimu5g01960 837 FunFam Beta-galactosidase 416 568 - -
Vimu5g01960 837 Pfam Galactose binding lectin domain 759 836 IPR000922 GO:0030246
Vimu5g01960 837 Gene3D - 446 576 - -
Vimu5g01960 837 FunFam Beta-galactosidase 290 415 - -
Vimu5g01960 837 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Vimu5g01960 837 SUPERFAMILY Galactose-binding domain-like 398 569 IPR008979 -
Vimu5g01960 837 Gene3D Glycosidases 19 341 - -
Vimu5g01960 837 FunFam Beta-galactosidase 589 729 - -
Vimu5g01960 837 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01960 Vimu-Chr5 31413359 31419243 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01960 23 690 Glycoside Hydrolase AT2G28470 75.185 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01960 - - gmx:100793198 1540.4