Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09193 ATGAAGCAAGGTCTCTTTTCCTTCTCCCTCCTTGTCTTACTCATGTTTTCCTCTTTGTATTCTTCCACCACAGCAGCTGTAGTAGCACCAGCATCAGCCCCAAAAGCCTCACAAAAAGCTGCCCCTTCTCCAAAGGCAGCAGCACCAACATCAAAACCATTAGTCCCCACATTACCTCAATCTCCAGACTCCTCTGACTCTGATTCCACACCTGATGACATCACCAGAATCCTCAGAAAGGCCAAAACATTCACCATCCTAACCCGCCTCCTCAAAACAACAGAAATAATGAACAACATCAACTCACAGCTCATAACTGCCAAGAGTGGCGGCTTAACCATCCTTGCACCAGATGACTCTGCCTTCTCACAGCTAAAAGCAGGGTTCCTTAACTCCTTAAACGAAGGCCAGAAGATAGAGCTGTTGCAATTCCACATCCTGCCAGAGTATGTTTCCAGCTCTAATTTTGATTCATTGAGCAACCCTGTGCAGACAGTGGCCGGGAAAGACCCTACAAGACTGCCACTGAATGTGGAGTCATATGGTAACAGTGTCAACATCTCAACAGGTGTGGTCAATGCCACAGTGACAGGTGTGGTGTACTCAGATAACAAGCTCGCCATATACCGTTTGGACAAGGTGCTACTTCCTCTGGATTTCTTCGTAACCAAGGCTCCAGCTGCAGCTCCTGTTGTCGCAAAGGCTCCAAAAGCTGATAAGGAGAAGTCATCTGCAGCAGATGAAGACGAGACAACCCAGGAACAGAACAATTCTGGAGCTGTGAGCTTAATTAGAATTAAGGGAACAGCGTTGATGTCCCTTGGACTAGCCCTTTCCCCTGCAACCGCACCAATACAACCTGCCCCTACACTTACCCCACCAGCCGCAGCACCTGCAAAACCATTAGTCCCCTCATTACCCCAATCCCCAAGTGACAACACCCCTGACACTCAAGGCGCCACTGACATTGTGGGAATCCTAAGAAGAGCCAACACATTCAACACCTTCATCCGTCTCATGAAAACAACCCAATTGGTCAACCAACTCAACTCCCAACTCATAACCATAAAATCTGGCGGCTTAACCATTCTAGCACCGGAGGACAGTGCCTTTACAGAACTCAAACCAGGGTTCCTCAACACTCTTTCCGATGGCCAAAAGCTCGAGCTCCTTCAGTTCCACGTTCTCCCAGACTTCGTCTCTAGCTCCAATTTCGACACGTTGACGAACCCAGTGAGAACATTGGCAGGGAATAAACCTGGCAAGGCGGAACTGAACGTGATCAGTTATGGTGGGAGTGTCAACATTTCAACAGGACCTGTTAACACCACGCTCACTGGCATCATATATACGGATAAACACCTTGCTATTTATAAGGTTGGTAAGGTGCTTCTTCCTTCTGAATTCGTTGCTACTAAGAAGACAATTGCCGCTGCACCCACTCTAGCTCCGGCACCCTCCACCGATGATGCAAAGGCACCTAAGCCTGAGAAGGAGAAGCCATTATCCTCGGAAGATTCCTCGGAATCATCTTCGCAGGTTGTTCCCGCAGAGACCTCTGGCGCTATGAAAATCAGCAAATGCGGAAAGTGGGTGTCCCTTGTTCTTGGAGTTGTCTTTGTGGCAGTGTTCGCAATCTAA 1641 0.4845 MKQGLFSFSLLVLLMFSSLYSSTTAAVVAPASAPKASQKAAPSPKAAAPTSKPLVPTLPQSPDSSDSDSTPDDITRILRKAKTFTILTRLLKTTEIMNNINSQLITAKSGGLTILAPDDSAFSQLKAGFLNSLNEGQKIELLQFHILPEYVSSSNFDSLSNPVQTVAGKDPTRLPLNVESYGNSVNISTGVVNATVTGVVYSDNKLAIYRLDKVLLPLDFFVTKAPAAAPVVAKAPKADKEKSSAADEDETTQEQNNSGAVSLIRIKGTALMSLGLALSPATAPIQPAPTLTPPAAAPAKPLVPSLPQSPSDNTPDTQGATDIVGILRRANTFNTFIRLMKTTQLVNQLNSQLITIKSGGLTILAPEDSAFTELKPGFLNTLSDGQKLELLQFHVLPDFVSSSNFDTLTNPVRTLAGNKPGKAELNVISYGGSVNISTGPVNTTLTGIIYTDKHLAIYKVGKVLLPSEFVATKKTIAAAPTLAPAPSTDDAKAPKPEKEKPLSSEDSSESSSQVVPAETSGAMKISKCGKWVSLVLGVVFVAVFAI. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09193 546 Gene3D FAS1 domain 305 467 IPR036378 -
Seca4g09193 546 Gene3D FAS1 domain 55 217 IPR036378 -
Seca4g09193 546 FunFam Fasciclin-like arabinogalactan protein 11 305 466 - -
Seca4g09193 546 ProSiteProfiles FAS1/BIgH3 domain profile. 71 215 IPR000782 -
Seca4g09193 546 MobiDBLite consensus disorder prediction 481 515 - -
Seca4g09193 546 MobiDBLite consensus disorder prediction 233 259 - -
Seca4g09193 546 MobiDBLite consensus disorder prediction 287 319 - -
Seca4g09193 546 ProSiteProfiles FAS1/BIgH3 domain profile. 320 464 IPR000782 -
Seca4g09193 546 MobiDBLite consensus disorder prediction 491 505 - -
Seca4g09193 546 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6 265 IPR045003 -
Seca4g09193 546 FunFam Fasciclin-like arabinogalactan protein 11 57 217 - -
Seca4g09193 546 SMART fasc_3 113 218 IPR000782 -
Seca4g09193 546 SMART fasc_3 362 467 IPR000782 -
Seca4g09193 546 Pfam Fasciclin domain 83 217 IPR000782 -
Seca4g09193 546 Pfam Fasciclin domain 332 466 IPR000782 -
Seca4g09193 546 MobiDBLite consensus disorder prediction 287 305 - -
Seca4g09193 546 SUPERFAMILY FAS1 domain 70 218 IPR036378 -
Seca4g09193 546 MobiDBLite consensus disorder prediction 235 249 - -
Seca4g09193 546 SUPERFAMILY FAS1 domain 318 467 IPR036378 -
Seca4g09193 546 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09193 Seca-Chr4 217955110 217958946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09193 - - pvu:PHAVU_002G241600g 413.305