Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00760 ATGACAGCGTTACTGAGTCTGTTGGTTTTGCTTTTCTTCTTCTGTTCTTATGCCCCTTCTTCGTTTTGTGCAAATGTCACGTACGACCACAGAGCATTGGTCATCGATGGCAAGCGCCGAGTCTTGTTCTCTGGTTCTATTCATTACCCTCGCAGCACTCCAGAGATGTGGCCAGACCTCATTCATAAATCCAAAGATGGAGGACTTGATGTCATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATAATTTCGAAGGTAGGGGTGATTTGGTCAGATTTGTGAAGGCAGTAGCAGCTGCAGGTCTATATGTACACCTGCGGATTGGTCCATATGCATGTGCCGAATGGAACTATGGtggtttccctctttggctgcattttattccgggaattcagttccgaactgataatgaaccaTTCAAGGCTGAGATGAAGAGGTTCACGGCTAAGATTGTGGATATGATGAAGCAACAGAACCTCTATACGTCACAGGGAGGGCCTATTATTTTGTCTCAGGTTGAAAATGAGTATGGGAACATTGATGCAGCCTATGGTCCTGCTGCTAAATCCTACATCAATTGGGCAGCATCAATGGCAACATCTCTTTATACAGGGGTTCCTTGGGTAATGTGCCAACAGACAGATGCTCCTGATCCAATTATTAACACATGCAATGGATTTTACTGCGATCAATTCACACCAAACACTTATGCAAAACCAAAATTGTGGACTGAGAGTTATACCGGATGGTTTCTTTCATTTGGCGATGCTGTGCCTCACAGACCAGTGGAAGATATTGCATTTGCAGTGGCACGCTTTTTCCAGTGGGGTGGAACTTTTCAAAATTACTACATGTACCATGGAGGGACTAATTTTGGCCGGTCTTCTGGTGGACCTTTCATTTCTAGTAGTTATGATTATGATGCACCAATTGATGAGTACGGAATTATTAGACAGCCTAAGTGGGGCCATCTTAAAGATGTGCATAAGGCCATAAAACTTTGTGAAGAGGCACTGATAGCAACTGATCCAACAATTACATCTCTTGGATCAAATATAGAGGCTGCAGTTTACAAGACAGGAGCTGTATGTGCAGCCTTCCTTGCCAACATTGCCACATCTGATGCAACAGTGACCTTTAATGGAAAGTCATATCACTTGCCCGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTATGATTTCAAGCTTCACAGCTGAATCTTTAAAAGAAGAGGTTGGTTCTTTGGATGATTCTGGCTCGGGATGGAGTTGGATTAGTGAACCTATTGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGATTATTGGAACAAATAAATACAACTGCTGATAGAAGTGATTACTTGTGGTACTCATTAAGCATTGATCTTGATGCTGGTACTCAAGCTGTCCTTCACATCGAATCACTTGGTCATGCACTTCACACTTTCATAAACAGGAAGCTTGCAGGGAGTGGAACGGGCAACCATGACAAAGCTAATGTTACGGTAGACATCCCCATCAAACTAGTGGCTGGGAAGAACACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATCACTGGTCCAGTGATTTTGAAAAGTTTAAAGAATGGCAGCATTCTTGATCTGTCCTCCCAGCAGTGGACATATCAGGTTGGCCTTAAAGGTGAAGATTTAGGTCTATCTTCTGGCAGTTCTGGACAGTGGAATTCACAATCAACCTTGCCTATAAACCAACCATTGACTTGGTACAAGACAAAGTTCGTTGCTCCCTCTGGCAGTAATCCAGTTGCAATTGATTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGGCGTTACTGGCCTACATATGTCTCTCCAAATGGCGGTTGTACTGACTCATGCAATTATAGAGGGACCTATCTTCCATCCAAATGCCTCAAGGACTGTGGAAAACCATCACAGACATTATACCACGTACCACGATCATGGTTACAACCAGATAGCAACACACTTGTGTTGTTTGAGGAAAGTGGAGGCAACCCTACCAAAATCTCTTTTGCTACAAAACAGATAGGAAGCATATGTTCTCATGTATCTGAATCTCACCCTCCACCTGTAGACTTGTGGAATTCAGATAGAGAATCAGGAAGAAAAATAGGGACAGTACTGTCACTGGAGTGCCCTTATCCTAATCAGGTTATCTCTTCCATTAAATTTGCAAGTTTTGGAACGCCTTATGGGACTTGTGGGAACTTCAAACATGGACGGTGCACAAGTAATAAGGCTCTATCCATTGTGCAGAAGGCCTGCATTGGATCAAGCAATTGTAGAATTGAACTATCAATTAATTCATTTGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2514 0.4189 MTALLSLLVLLFFFCSYAPSSFCANVTYDHRALVIDGKRRVLFSGSIHYPRSTPEMWPDLIHKSKDGGLDVIETYVFWNLHEPVRGQYNFEGRGDLVRFVKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNEPFKAEMKRFTAKIVDMMKQQNLYTSQGGPIILSQVENEYGNIDAAYGPAAKSYINWAASMATSLYTGVPWVMCQQTDAPDPIINTCNGFYCDQFTPNTYAKPKLWTESYTGWFLSFGDAVPHRPVEDIAFAVARFFQWGGTFQNYYMYHGGTNFGRSSGGPFISSSYDYDAPIDEYGIIRQPKWGHLKDVHKAIKLCEEALIATDPTITSLGSNIEAAVYKTGAVCAAFLANIATSDATVTFNGKSYHLPAWSVSILPDCKNVVLNTAKINSASMISSFTAESLKEEVGSLDDSGSGWSWISEPIGISKADSFSKFGLLEQINTTADRSDYLWYSLSIDLDAGTQAVLHIESLGHALHTFINRKLAGSGTGNHDKANVTVDIPIKLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKSLKNGSILDLSSQQWTYQVGLKGEDLGLSSGSSGQWNSQSTLPINQPLTWYKTKFVAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSPNGGCTDSCNYRGTYLPSKCLKDCGKPSQTLYHVPRSWLQPDSNTLVLFEESGGNPTKISFATKQIGSICSHVSESHPPPVDLWNSDRESGRKIGTVLSLECPYPNQVISSIKFASFGTPYGTCGNFKHGRCTSNKALSIVQKACIGSSNCRIELSINSFGDPCKGVAKSLAVEASCA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00760 837 Gene3D Glycosidases 21 341 - -
Cca04g00760 837 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Cca04g00760 837 Gene3D - 422 568 - -
Cca04g00760 837 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Cca04g00760 837 PANTHER BETA-GALACTOSIDASE 5 831 - -
Cca04g00760 837 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Cca04g00760 837 Gene3D - 748 837 IPR043159 -
Cca04g00760 837 PANTHER BETA-GALACTOSIDASE RELATED 5 831 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 SUPERFAMILY Galactose-binding domain-like 398 569 IPR008979 -
Cca04g00760 837 Pfam Galactose binding lectin domain 759 836 IPR000922 GO:0030246
Cca04g00760 837 ProSiteProfiles SUEL-type lectin domain profile. 751 837 IPR000922 GO:0030246
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Cca04g00760 837 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
Cca04g00760 837 Gene3D - 569 729 - -
Cca04g00760 837 SUPERFAMILY Galactose-binding domain-like 581 747 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00760 Cca-Chr4 7624547 7631413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00760 23 690 Glycoside Hydrolase AT2G28470 76.219 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00760 - - gmx:100793198 1533.08