Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0174 ATGGATGACGTTTGCGAAGGAAAGGACTTCACGTTTCCGAAGCAGGAGGAGAAGATTCTTGACTTCTGGACCGAAATCGACGCATTCCAGACTCAGCTGTCTCTCACACAGGACAAGCCGGAGTACATCTTCTACGATGGCCCTCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATCCTCGCCGGCACCATCAAGGACATCGTCACGCGCTACCACTCCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTCCCCATCGAGAACGAGATCGATAAGAAGCTTGGAATCAAAAAGCGCGAGGACGTCCTCAAGCTCGGAATCGACAAGTACAACGAGGAGTGCCGCAGCATCGTCACGCGCTACGTCTCCGAGTGGGAGACCGTCATCACGCGCACCGGAAGGTGGATCGACTTCAGAAATGACTACAAAACCATGGACCTCAACTTCATGGAGTCCGTCTGGTGGGTTTTCGCCCAGTTATACAACAAAGATCTTGTCTATAAAGGTTTCAAGGTCATGCCGTATAGCACCGGCTGTAAAACTCCGCTTTCTAATTTCGAGGCTGGTCAGAATTACAAGGATGTATCTGATCCTGAAGTGTTTATGACATTTCCAGTCGTGGGTGATCCGCATGGTGCATCTTTTGTAGCATGGACAACGACTCCATGGACTCTTCCTAGCAATCTTGCACTGTGCATCAATGCCAATTTTACCTATGTGAAGGTCGGTTGGTATGAACCATTATTTGATTACTTCAAGGAGTTATCTGATACAGCTTTTAGAGTTGTTGCCGACAATTATGTTACTGATGATAGTGGTACTGGTGTTGTCCATTGTGCTCCTGCTTTTGGTGAAGATGATTTTCGTGTTTGCATTGAGAATCAAATTCTTAGCAAGGATAAACTAACTGTAGCTGTTGATGATGATGGCTGCTTTACTGACAAAATTACCGATTTTAGTGGGTGCTACATCAAACATGCTGACAAAGATATCATCGAAGCTGTGAAGGCAAAGGGTAGACTGGTTAAATCTGGAGCATTTACACATTCCTATCCATACTGCTGGAGATCTCATACCCCTCTTATCTACAGAGCTGTTCCAAGCTGGTTTGTTAAAGTGGAGTCGTTGAAAGAGAAATTGTTGGAAAACAATAAGAAGACACACTGGGTTCCTGATTTTGTCAAGGATAAGCGATTCCACAATTGGTTGGAAAATGCAAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGGACCCCTCTCCCTATATGGATTAGTGAGGATGAGAAGGAAGTAGTTGTCATAGATTCTGTTGCAAAACTTGAAGAGCTTTCAGGTGTAAGGGTGCTTGACCTCCATCGTCACAACATTGATCATATTACAATTAAATCTGACAGTGGCCGTGTGCTTCGACGTGTTGATGATGTAAAAATGTTTATTCATAGTTTTTCAGCAATTTTGTTAGTGTTTGACTGCTGGTTTGAGAGTGGATCCATGCCATATGCGTATATCCATTATCCTTTTGAAAATGTTGAGCTGTTTGAGAAGAATTTTCCGGGCCATTTTGTGGCTGAAGGGCTGGATCAAACACGTGGTTGGTTTTATACTCTTATGGTGCTGGCTACTGCTTTATTTGGCAAGCCTGCATTTAGGAATCTAATCTGCAATGGACTTGTCCTGGCTGAAGATGGAAAAAAGATGAGTAAAAGCTTGAAAAATTACCCTTCACCAATGGATGTTATTAATGATTATGGAGCGGATGCCTTGCGATTGTACCTTATCAACTCTCCTGTTGTGCGTGCTGAGCCACTTCGTTTCAAGAAAGAAGGAGTTTATGGCGTTGTTAGGGATGTTTTCCTTCCTTGGTATAATGCATATCGGTTCCTTGTTCAAAATGCAAAGCGACTTGAAGTTGAATGTTTAGCACCTTTTGTCCCCTTTGATCAGGCCACACTTCTGAGGTCATCGAATGTTCTTGATCAATGGATTAACTCAGCCACCCAAAGCCTTATTCATTTTGTCCGACAAGAAATGGATGGCTACCGCCTTTACACGGTGGTTCCTTATCTTCTGAAGTTTCTTGATAACCTTACAAATATTTATGTAAGGTTCAACCGTAAGAGACTTAAAGGTCGTTCTGGGGAAGAAGACTGCAGGATAGCACTATCAACTCTTTACAATGTGCTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTCTTCACTGAGGTGCTCTATCAAAATATGCGAAAAGTTTCTAATGAATCAGAGGAAAGCATACACTATTGCAGTTTTCCTACGGAAGAAGGAAGGAGAGGAGAACGAATTGAGCAGAGTGTTTCAAGGATGATGACAATAATTGATCTGGCCAGAAACATTCGTGAGCGGCACAACAAGCCTCTTAAGACTCCACTAAGGGAGATGGTTATAGTTCATCCTGATGCAGACTTCCTTGATGACATAAATGGAAAATTGAAGGAGTATGTGCTAGAGGAACTCAATGTACGATCCCTTGTTCCATGTAATGATACTTTAAAATATTCATCTTTACGTGCTGAACCTGAATTTAGTGTTTTAGGAAAGAGGCTAGGAAAATCAATGGCCATTGTTGCCAAAGAAATCAAAGCAATGTCACAGGAAAATATTTTGGCTTTTGAGAATGCTGGAGAAGTCGTCATTGCAAATCACTGTTTGAAGCTGAATGATATTAAGGTTGTCCATGATTTTAAACGACCTGATGGTATGACTGAGAAGGAGGTTGATGCTGCTGGAGATGGTGATGTTCTAGTGATATTGGACTTGCGTCCTGACGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTTAATAGGATTCAAAAGTTACGGAAGAAAGTTGCTCTTGAACCAACTGACATGGTGGAGGTTTATTTTGAATCATTAGATGATGACAAATCGGCCTCTCAGAGAGTTTTGCTTTCACAGGAATCCTACATCAGAGATGCTATTGGTAGTCAGTTGCTTCCAAATTCTCTGATGCCTGTACATGCAGTTGTCCTTGGCGAAGAGAGGTTCCATGGGATAGCCAACATGTCCTTTGGTATCACTTTGACAAGACCTGCATCGATGTTTAACACAAAAGCCATTCTTTCACTTTTTACAGTTCTTACAGGTGATGCAAAAAGTGCACATAATTTGCAAACTTACTTGCTATCGAGAGATTATGTGAAGTTGAAGTCTGAGTTTCAAGATGGAAATGGAAAGAAAATTGTTGATTCAATTGAACAGCAACCTGCTGTGGAAGTGGTTCTTGGTGAGCATGTCTTCCTCTCTGTGGGGGACTATTACCTGCCTGGACAATCTGACTGA 3378 0.431 MDDVCEGKDFTFPKQEEKILDFWTEIDAFQTQLSLTQDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYHSMTGHHVTRRFGWDCHGLPIENEIDKKLGIKKREDVLKLGIDKYNEECRSIVTRYVSEWETVITRTGRWIDFRNDYKTMDLNFMESVWWVFAQLYNKDLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVVGDPHGASFVAWTTTPWTLPSNLALCINANFTYVKVGWYEPLFDYFKELSDTAFRVVADNYVTDDSGTGVVHCAPAFGEDDFRVCIENQILSKDKLTVAVDDDGCFTDKITDFSGCYIKHADKDIIEAVKAKGRLVKSGAFTHSYPYCWRSHTPLIYRAVPSWFVKVESLKEKLLENNKKTHWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPIWISEDEKEVVVIDSVAKLEELSGVRVLDLHRHNIDHITIKSDSGRVLRRVDDVKMFIHSFSAILLVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMDVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEVECLAPFVPFDQATLLRSSNVLDQWINSATQSLIHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEEDCRIALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVSNESEESIHYCSFPTEEGRRGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLDDINGKLKEYVLEELNVRSLVPCNDTLKYSSLRAEPEFSVLGKRLGKSMAIVAKEIKAMSQENILAFENAGEVVIANHCLKLNDIKVVHDFKRPDGMTEKEVDAAGDGDVLVILDLRPDESLFEAGAAREIVNRIQKLRKKVALEPTDMVEVYFESLDDDKSASQRVLLSQESYIRDAIGSQLLPNSLMPVHAVVLGEERFHGIANMSFGITLTRPASMFNTKAILSLFTVLTGDAKSAHNLQTYLLSRDYVKLKSEFQDGNGKKIVDSIEQQPAVEVVLGEHVFLSVGDYYLPGQSD 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0174 1125 Gene3D HUPs 4 207 IPR014729 -
Aed5g0174 1125 Gene3D HUPs 325 610 IPR014729 -
Aed5g0174 1125 PANTHER BNAUNNG00270D PROTEIN 1 249 - -
Aed5g0174 1125 PANTHER BNAUNNG00270D PROTEIN 252 1051 - -
Aed5g0174 1125 Gene3D - 208 256 IPR009008 GO:0002161|GO:0006418
Aed5g0174 1125 SUPERFAMILY Nucleotidylyl transferase 10 623 - -
Aed5g0174 1125 Pfam Domain of unknown function (DUF5915) 836 1002 - -
Aed5g0174 1125 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 628 876 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed5g0174 1125 PRINTS Isoleucyl-tRNA synthetase signature 492 505 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Aed5g0174 1125 PRINTS Isoleucyl-tRNA synthetase signature 532 541 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Aed5g0174 1125 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Aed5g0174 1125 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Aed5g0174 1125 CDD Anticodon_Ia_Ile_ABEc 613 800 IPR033709 GO:0000049
Aed5g0174 1125 Gene3D - 615 807 - -
Aed5g0174 1125 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 249 IPR023586 GO:0004822
Aed5g0174 1125 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 358 IPR009008 GO:0002161|GO:0006418
Aed5g0174 1125 PANTHER SOLEUCYL-TRNA SYNTHETASE 252 1051 IPR023586 GO:0004822
Aed5g0174 1125 CDD IleRS_core 40 613 - -
Aed5g0174 1125 Pfam tRNA synthetases class I (I, L, M and V) 260 609 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed5g0174 1125 Pfam tRNA synthetases class I (I, L, M and V) 18 248 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed5g0174 1125 Gene3D - 257 323 IPR009008 GO:0002161|GO:0006418
Aed5g0174 1125 Pfam Anticodon-binding domain of tRNA ligase 667 816 IPR013155 GO:0004812|GO:0006418
Aed5g0174 1125 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0174 Aed-Chr5 1243370 1257979 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0174 K01870 - atr:18443658 1702.18