Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2525 ATGAGAGCGTCACATATCCTGTTCTTTTTGCTTTGGTTGTTCTGCGTTTATGCCCCTTCTTCGTTTTGTGCAAATGTCACGTACGACCACAGAGCATTGGTCATCGATGGCAAGCGCCGAGTCTTGGTCTCTGGTTCTATTCATTACCCGCGTAGCACCCCAGAGATGTGGCCAGACCTCATTCAGAAATCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATAATTTTGAAGGTAGGGGCGATTTGGTCAGATTTGTGAAGGCAGTGGCAGCAGCAGGTCTATATGTGCATCTTCGGATTGGTCCATATGCATGTGCAGAATGGAACTATGGTGGTTTCCCTCTTTGGCTGCATTTCATTCCGGGAATTCAGTTCCGGACTGATAACGAACCATTCAAGAAAGAAATGAAGCGGTTCACTGCTAAGATTGTGGACATGATGAAGCAAGAGAACCTCTATGCGTCACAGGGAGGACCTATTATTTTGTCTCagATTGAAAATGAGTATGGGAACGTTGATGCACAATATGGTCCTGCTGCTAAATCCTACATCAATTGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGATCCAATTATTAACACATGCAATGGATTTTATTGCGATCAATTCACACCAAACTCCAACGCAAAACCAAAAATGTGGACTGAGAATTATAGTGGATGGTTTCTTTCATTTGGGGATGCTGTGCCTCACAGACCAGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAGCGAGGCGgaacttttcaaaattactaTATGTACCACGGGGGGACTAATTTTGGCCGGACTTCTGGTGGACCTTTCGTTTCTACCAGTTATGATTATGATGCACCAATTGATGAGTATGGAATTATTAGACAGCCTAAGTGGGGCCACCTTAAAGACGTGCATAAGGCCATAAAACTTTGTGAAGAAGCACTGATAGCTACCGATCCAATAATTACATCTCTTGGACCAAATATAGAGGCTACAGTTTACAAGACAGGAGCTGTATGTGCAGCCTTCCTTGCCAACATTGCCACATCTGATGCAACAGTGACCTTTAATGGAAATTCATATCACTTGCCCGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAGTGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTATGATTTCAAGCTTCACAACTGAACCTTTAAAAGAAGAGGTTGGTTCTTTGGATGATTCTGGCTCAGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGATTACTGGAGCAAATAAATACAACAGCTGATAGAAGTGATTACTTGTGGTACTCATTGAGCATTGATCTTGATGCTGGTGCTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCCCTTCATGCTTTCATAAATGGGAAGCTTGcagGGAGTGGAACGGGCAACCATGAGAAAGCTAAGTTCAATGTAGACATCCCTATCACACTAGTGGCTGGGAAGAACACAATTGATAtcctgagtttaactgtgggacTTCAGAACTACGGAGCTTTTTTTGACACATGGGGTGCGGGGATCACTGGTCCAGTGATATTGAAAGGTTTGAAGAATGGCAGCACTCTTGATCTCTCCTCCCAGCAGTGGACATATCAGGTTGGCCTTAAAGGTGAAGATTTAGGTCTATCTAGTGGCAGTTCTGGACAGTGGAATTCACAATCCACCTTACCTACAAATCAACCGTTGATTTGGTACAagACAAACTTCGTTGCACCCTCTGGCAGTAATCCAATTGCAATTGACTTCTCGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACTGAGCATTGGGCGGTACTGGCCTACATATGTCTCTCCAAATAATGGTTGTACTGACTCATGCAATTATAGAGGGGCCTATAATGCATCCAAATGTCTCAAGAGCTGTGGAAAACCATCACAGACATTATACCATGTACCACGATCATGGCTACGACCAGATAGCAACACACTTGTATTGTTTGAAGAAAGTGGAGGCAACCCTACGCAAATCTCTTTTGCTACAAAACAGATAGGAAGCGTGTGTTCAAGTGTATCGGAATCTCACCCTCCACCTGTAGACTTGTGGAATTCACATAAAGAATCAGGAAGAAAAGTAGGGCCTGTACTGTCACTGAAGTGCCCTTATCCTAATCAGGTGATCTCATCCATTAAATTTGCAAGTTTTGGAACGCCTCATGGGACTTGTGGGAACTTCAAACATGGACGCTGCAGCAGCAATAAGGCTCTATCCATTGTGCAGAAGGCCTGCATTGGATCAAGCAGTTGTAGAATTGGACTATCAATTAATACATTCGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCCTCTTGTGCATAG 2514 0.4308 MRASHILFFLLWLFCVYAPSSFCANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRGQYNFEGRGDLVRFVKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNEPFKKEMKRFTAKIVDMMKQENLYASQGGPIILSQIENEYGNVDAQYGPAAKSYINWAASMATSLDTGVPWVMCQQLDAPDPIINTCNGFYCDQFTPNSNAKPKMWTENYSGWFLSFGDAVPHRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFVSTSYDYDAPIDEYGIIRQPKWGHLKDVHKAIKLCEEALIATDPIITSLGPNIEATVYKTGAVCAAFLANIATSDATVTFNGNSYHLPAWSVSILPDCKSVVLNTAKINSASMISSFTTEPLKEEVGSLDDSGSGWSWISEPIGISKADSFSKFGLLEQINTTADRSDYLWYSLSIDLDAGAQTVLHIESLGHALHAFINGKLAGSGTGNHEKAKFNVDIPITLVAGKNTIDILSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSTLDLSSQQWTYQVGLKGEDLGLSSGSSGQWNSQSTLPTNQPLIWYKTNFVAPSGSNPIAIDFSGMGKGEAWVNGLSIGRYWPTYVSPNNGCTDSCNYRGAYNASKCLKSCGKPSQTLYHVPRSWLRPDSNTLVLFEESGGNPTQISFATKQIGSVCSSVSESHPPPVDLWNSHKESGRKVGPVLSLKCPYPNQVISSIKFASFGTPHGTCGNFKHGRCSSNKALSIVQKACIGSSSCRIGLSINTFGDPCKGVAKSLAVEASCA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2525 837 SUPERFAMILY Galactose-binding domain-like 581 747 IPR008979 -
Ssu3g2525 837 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Ssu3g2525 837 Pfam Galactose binding lectin domain 759 836 IPR000922 GO:0030246
Ssu3g2525 837 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Ssu3g2525 837 ProSiteProfiles SUEL-type lectin domain profile. 751 837 IPR000922 GO:0030246
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 SUPERFAMILY Galactose-binding domain-like 398 569 IPR008979 -
Ssu3g2525 837 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
Ssu3g2525 837 Gene3D - 746 837 IPR043159 -
Ssu3g2525 837 Gene3D - 567 729 - -
Ssu3g2525 837 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Ssu3g2525 837 Gene3D Glycosidases 21 341 - -
Ssu3g2525 837 PANTHER BETA-GALACTOSIDASE 5 831 - -
Ssu3g2525 837 PANTHER BETA-GALACTOSIDASE RELATED 5 831 IPR001944 GO:0004553|GO:0005975
Ssu3g2525 837 Gene3D - 422 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2525 Ssu-Chr3 77776744 77783069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2525 23 690 Glycoside Hydrolase AT2G28470 76.662 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2525 - - gmx:100793198 1579.69