Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0329 ATGAGGGCGACAGAGATTCTGTTCCTTTTGTTTTGGTTCCTCGGCATTCTGGCCTACACGTCATTTTGCGCCAATGTTACGTACGATCACCGTGCATTGGTCGTAGACGGCAAGCGCCGGATCTTGTTCTCTGGTTCTATTCATTACCCTCGTAGTACCCCAGAGATGTGGCCGGACCTTATCCAGAAATCCAAAGACGGAGGATTGGATGTGGTTGAAACCTATGTTTTCTGGAACAATCACGAACCAATTCGAGGCCAGTATGATTTTGAAGGCAGGAACGATTTAGTCACATTTGTGAAGTTAGTAGCAGCAGCGGGTCTATACGTGCATCTCCGGATTGGTCCATACGCATGCGCTGAATGGAACTATGGTGGTTTCCCTCTTTGGTTGCATTTTATTCCTGGAATTCAGTTCCGAACTGATAATGAACCATTCAAGGCAGAAATGAAGCGATTCACTGCTAAAATTGTGGACTTGATGAAGCAAGAAAAACTCTATGCGTCTCAGGGAGGACCTATTATTCTATCTCAGATCGAAAATGAGTATGGTAACGGTGGCATTGAGTCGGCCTATGGTCCTGCTGGTAAATCCTACGTCAAATGGGCAGCAACAATGGCTACATCTCTTGATACGGGTGTTCCTTGGGTCATGTGCCAGCAAGGCGATGCTCCTGACCCAATTATTAACACGTGCAACGGATTTTACTGCGATCAGTTCACACCAAATTCTAACTCAAAACCAAAAATGTGGACTGAGAATTGGGTTGGATGGTTTCTTTCATTCGGTGGTGCAGCGCCATACAGACCTGTCGAAGATATTGCATTTGCTGTGGCACGCTTTTTCCAGCGGGGTGGAACATTTCAAAACTACTACATGTACCATGGTGGGACCAACTTTGGCCGTACTTCTGGTGGACCATTCATCTCTACGAGTTATGATTACGATGCACCAATTGATGAGTATGGAGTTATTAGACAACCTAAGTGGGGCCACCTTAAAGATTTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTGATAGCCACTGATCCCAATATTAAATCTCTTGGAATAAATCTAGAGGCTGCAGTTTACAACACAGGATCTGTATGTGCTGCCTTTCTTGCTAATGTGGGCACAACATCTGATGCAACAGTAAATTTCAATGGAAATTCATATCACTTGCCTGCATGGTCCGTGAGCATCTTACCAGACTGCAAGAATGTAGTTCTTAACACTGCAAAGATCAATTCTGCAACTATGATTTCTAGCTTCACAAGTGAATCATTAAAAGAAGATATCAGTCCTTTAGAAGTTTCTAGCTCGGGATGGAGTTGGATAAGTGAACCGGTGGGTATTTCAAAGGCCGATGCATTCACAAAAGTTGGATTACTGGAGCAAATAAATACAACAGCAGATAGAAGTGACTACTTGTGGTACTCATTAAGCATTGATCTTAAAGATGGGGGTAGCACTCAAACTGTCCTTCACATTGAATCACTTGGTCATGCCCTTCATGCTTTTATCAATGGGAAGCTTGCAGGTAGTGGGACAGGAAGCAGTAGCAATGCCAAGGTTGCCAAGGACATTCCCATCACCCTTGTAGCTGGGAAGAACACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCATTTTTTGACACATGGGGTGCTGGAATCACTGGTCCTGTAACATTGAAAGGTTTGAAAAATGGAAGCACTCTTGATCTCTCCTCCCAACAGTGGACATATCAGGTTGGACTAAAAGGTGAGGATTTAGGTCTTTCTGACGGAAGTTCTGGACAGTGGAACTCACAATCTACCTTACCTAAGAAGCAACCATTAACTTGGTACAAGACAATCTTTGCTGCTCCTTCGGGCAGTAATCCAGTAGCAATTGACTTCACAGGCATGGGGAAAGGCGAAGCTTGGGTAAATGGACAAAGCATAGGGCGATTCTGGCCCACGTATATCTCTCCAAATGGTGGTTGCACTGACTCTTGCAATTATAGAGGGCCTTTTAGTTCATCCAAATGTCTCAAGAATTGTGGAAAACCATCACAAACATTATACCATGTACCACGCTCGTGGTTGCGACCAAATGGCAACATACTTGTATTGTTTGAGGAAATTGGAGGTGATCCAACACAAATAACTTTTGCTACAAGACAGATAGGAAGCCTGTGTTCACATGTGTCAGAATCTCACCCACCACCTGTAGACTCGTGGAATTCAGATACAGAATCAGGAAGAAAACTAGGGCCTGTACTTTCACTTGAGTGCCCTTACCCTCATCAGCTCATCTCTTCCATTAAATTTGCAAGCTTTGGAACACCTCATGGAGCTTGTGGGAACTTCAACCATGGCCGCTGCAGTAGTAAAAGGGCTCTCTCCATTCTACAGAAGGCCTGCATTGGATCAAGAAACTGTAGTATTGGAGTGTCAATTGATACATTTGAGGATCCATGCAGAGGCGTGACAAAGAGCTTAGCAGTTGAGGCTGCTTGTACATAG 2529 0.4421 MRATEILFLLFWFLGILAYTSFCANVTYDHRALVVDGKRRILFSGSIHYPRSTPEMWPDLIQKSKDGGLDVVETYVFWNNHEPIRGQYDFEGRNDLVTFVKLVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNEPFKAEMKRFTAKIVDLMKQEKLYASQGGPIILSQIENEYGNGGIESAYGPAGKSYVKWAATMATSLDTGVPWVMCQQGDAPDPIINTCNGFYCDQFTPNSNSKPKMWTENWVGWFLSFGGAAPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFISTSYDYDAPIDEYGVIRQPKWGHLKDLHKAIKLCEEALIATDPNIKSLGINLEAAVYNTGSVCAAFLANVGTTSDATVNFNGNSYHLPAWSVSILPDCKNVVLNTAKINSATMISSFTSESLKEDISPLEVSSSGWSWISEPVGISKADAFTKVGLLEQINTTADRSDYLWYSLSIDLKDGGSTQTVLHIESLGHALHAFINGKLAGSGTGSSSNAKVAKDIPITLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVTLKGLKNGSTLDLSSQQWTYQVGLKGEDLGLSDGSSGQWNSQSTLPKKQPLTWYKTIFAAPSGSNPVAIDFTGMGKGEAWVNGQSIGRFWPTYISPNGGCTDSCNYRGPFSSSKCLKNCGKPSQTLYHVPRSWLRPNGNILVLFEEIGGDPTQITFATRQIGSLCSHVSESHPPPVDSWNSDTESGRKLGPVLSLECPYPHQLISSIKFASFGTPHGACGNFNHGRCSSKRALSILQKACIGSRNCSIGVSIDTFEDPCRGVTKSLAVEAACT 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0329 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Glsi04g0329 842 FunFam Beta-galactosidase 419 573 - -
Glsi04g0329 842 FunFam Beta-galactosidase 21 343 - -
Glsi04g0329 842 Gene3D - 425 572 - -
Glsi04g0329 842 Pfam Beta-sandwich domain in beta galactosidase 347 417 IPR041392 -
Glsi04g0329 842 ProSiteProfiles SUEL-type lectin domain profile. 756 842 IPR000922 GO:0030246
Glsi04g0329 842 PANTHER BETA-GALACTOSIDASE RELATED 18 757 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 Gene3D - 756 842 IPR043159 -
Glsi04g0329 842 FunFam Beta-galactosidase 594 734 - -
Glsi04g0329 842 CDD Gal_Rha_Lectin_BGal 759 841 - -
Glsi04g0329 842 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
Glsi04g0329 842 Gene3D Glycosidases 20 343 - -
Glsi04g0329 842 SUPERFAMILY Galactose-binding domain-like 586 751 IPR008979 -
Glsi04g0329 842 FunFam Beta-galactosidase 292 418 - -
Glsi04g0329 842 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Glsi04g0329 842 Gene3D - 594 734 - -
Glsi04g0329 842 SUPERFAMILY Galactose-binding domain-like 401 574 IPR008979 -
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Glsi04g0329 842 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0329 Glsi-ChrGlsi04 2117006 2123965 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0329 23 695 Glycoside Hydrolase AT2G28470 77.206 0.0 1086