Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0395 ATGAGAGCGACACGGATTCTATTTCTTTTCTTTTGGTTCATAGGCATTCTAGCCTACACGTCGTTTTGCGCCAATGTCACGTACGACCACCGTGCATTGCTCATCGGCGGCAAGCGCCGTATCCTCATCTCTGGTTCCATTCATTACCCTCGCAGCACTCCCGAGATGTGGCCGGACCTTATTCAGAAATCCAAAGACGGAGGACTGAATGTGATTGAAACATATGTGTTCTGGAACAAGCACGAACCAGTGCGAGGCCAGTATAACTTTGAAGGCGGGAACGATCTAGTGAAATTTGTGAAGTTAGCAGCAGCAGCAGGTCTATACGTGCATCTACGAATTGGTCCGTACGTATGCGCTGAATGGAACTACGGCGGTTTCCCTCTCTGGTTGCATTTTATTCCTGGAATTCAGTTCCGTACTGATAATGAACCATTCAAGAGAGAAATGCAACGATTTACTGCTAAAATTGTGGACTTGATGAAGCAAGAGAAACTCTATGCGTCTCAGGGAGGACCTATTATATTATCTCAGATTGAAAATGAGTATGGTAACGGAGACATTGAGCCTCGCTATGGTCCTGCTGCAAAACCTTACGTCAAGTGGGCAGCTGCAATGGCCACGTCACTCAATACGGGAGTTCCCTGGGTCATGTGCCAGCAAGCAGATGCTCCGGACCCCATTATTAACACTTGCAATGGATTTTACTGTGATCAATTCACACCAAACTCTAACCAGAAACCAAAATTTTGGACTGAGAATTGGAGTGGATGGTTTCGATCATTTGGTGGTGCAGTTCCCTACAGACCTGTAGAAGATCTTGCATTTGCTGTGGCACGGTTTTTCCAACGAGGGGGCACATTACAAAATTATTATATGTACCATGGTGGGACTAACTTTGACCGAACTTCTGGCGGACCATTCATCTCAACAAGTTATGATTACGATGCACCAATTGATGAGTATGGAATTGTGAGACAGCCGAAGTGGGGACACCTCAAAGATGTGCATAAGGCCATAATGCTTTGTGAAGAAGCGTTGATAGCCACTGATCCCCAAATTAAATCGCTTGGTCCAAATCTAGAGGCTGCAGTTTACCGGGCAGGATCTACGTGTGCTGCGTTTCTTGCCAATGTGGGCACCTCATCTGATGCAACAGTAAATTTCAATGGCAATTCCTATCACTTGCCTGCCTGGTCTGTGAGCATTTTACCAGACTGCAAGAATGTAGCGCTCAATACTGCAAAGGTTAATTCTCTCTCTACCATTTCAAGCTTCACGAGAGAAATTTTCAAAGAAGACAGTGATTCTTTAGAAGGTTCTAGTTCCGGGTGGAGTTGGACAAGTGAAACAGTAGGTATTTCAAAAGATGATGAATTCTCAAAAGTTGGATTACTGGAGCAAATAAATACAACAGCAGATAGAAGTGACTATTTGTGGTACTCATTGAGCATTGATCTTGATGATGATGGTGGGCCTCAAACTGTCCTTCACATCGAATCACTTGGTCATGCCCTCCATGCATTTATCAATGGGAAGCTTGCAGGGAGTGGAGTCCGTGATGCTGCCAAAAAGTTGGATGTTCCTGTAACTCTTGTGGCTGGGAAGAACACTATTGATCTCCTGAGTCTAACTGTGGGACTTCAGAACTATGGAGCCTTTTTTGACACATGGGGTGCTGGAATAACTGGCCCTGTTAGATTGAACGGTTTGAAAAATGGGAGCACTCTTGATCTCTCCTCCCAGCAGTGGACATATCAGGTTGGTCTTCAAGGTGAACAATTAGGTCTTTCTGATGGTAGTTCTGGAAACTGGAACTCACAGTCTACCTTACCTAAGAATCAACCATTGACTTGGTACAAGATAATGCAGTGA 1875 0.448 MRATRILFLFFWFIGILAYTSFCANVTYDHRALLIGGKRRILISGSIHYPRSTPEMWPDLIQKSKDGGLNVIETYVFWNKHEPVRGQYNFEGGNDLVKFVKLAAAAGLYVHLRIGPYVCAEWNYGGFPLWLHFIPGIQFRTDNEPFKREMQRFTAKIVDLMKQEKLYASQGGPIILSQIENEYGNGDIEPRYGPAAKPYVKWAAAMATSLNTGVPWVMCQQADAPDPIINTCNGFYCDQFTPNSNQKPKFWTENWSGWFRSFGGAVPYRPVEDLAFAVARFFQRGGTLQNYYMYHGGTNFDRTSGGPFISTSYDYDAPIDEYGIVRQPKWGHLKDVHKAIMLCEEALIATDPQIKSLGPNLEAAVYRAGSTCAAFLANVGTSSDATVNFNGNSYHLPAWSVSILPDCKNVALNTAKVNSLSTISSFTREIFKEDSDSLEGSSSGWSWTSETVGISKDDEFSKVGLLEQINTTADRSDYLWYSLSIDLDDDGGPQTVLHIESLGHALHAFINGKLAGSGVRDAAKKLDVPVTLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVRLNGLKNGSTLDLSSQQWTYQVGLQGEQLGLSDGSSGNWNSQSTLPKNQPLTWYKIMQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0395 624 FunFam Beta-galactosidase 22 343 - -
Prci6g0395 624 Pfam Beta-sandwich domain in beta galactosidase 347 417 IPR041392 -
Prci6g0395 624 Gene3D - 456 587 - -
Prci6g0395 624 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Prci6g0395 624 SUPERFAMILY Galactose-binding domain-like 401 570 IPR008979 -
Prci6g0395 624 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Prci6g0395 624 FunFam Beta-galactosidase 292 418 - -
Prci6g0395 624 PANTHER BETA-GALACTOSIDASE RELATED 20 621 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 615 624 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Prci6g0395 624 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Prci6g0395 624 FunFam Beta-galactosidase 419 570 - -
Prci6g0395 624 Gene3D Glycosidases 20 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0395 Prci-Chr6 2527524 2533384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0395 24 621 Glycoside Hydrolase AT2G28470 74.834 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0395 - - gmx:100793198 1059.67