Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01979 ATGTGGCCAGACATCATTCAAAAGTCCAAATATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCAAGGCCAGTATAATTTTGAAGGTAGTGCAGATTTGGTTAAATTCGTGAAGACAGTGGCAGCAGCAGGTCTGTATGTGCATCTGCGGATTGGTCCATACGCATGTGCTGAATGGAACTACGGTGGTTTCCCTCTTTGGCTACATTTTATTCCGGGAATTCAGTTCCGAACTGATAACAAACCATTTAAGGATGAAATGAAGCGGTTCACCGCTATGATTGTGGATATGATGAAGAAAGAGAACCTCTATGCATCACAGGGAAGACCAATTATTTTGTCTCAGATCGAAAATGAATATGGAAACATTGATGCGGCCTATGGTCCTGCTGCTAAATCCTACATCAAATGGGCTGCATCGATGGCAACTTCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGGCAGATGCTCCTGACCCAATTATTAACACATGCAATGGATTTTACTGCGACCAATTCAATCCAAACTCTAACTCAAAGCCAAAAATGTGGACTGAGAACTGGAGTGGATGGTTTCTTGCGTTTGGTGGTGCTGTGCCTTATAGACCAGTGGAAGATCTTGCTTTTGCTGTGGCACGCTTTTACCAACTAGGTGGAACTTTTAATAATTACTACATGTATCATGGAGGGACTAATTTTGGCCGAACTACCGGTGGACCTTTCATTTCTACTAGTTATGACTATGATTCTCCAATTGATGAGTATGGAACTATTAGACAACCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCATAAAACTTTGTGAAGAAGCACTGACAGCTACTGATCCAACAATCACATCTATTGGACCAAATATAGAGGCTGCAGTTTACAAGACAGGATCTACCTGTGCTGCCTTCATTGCCAACAACAATGAAACATCTGATGCAAATGTGACCTTCAATGGAAATTCATATCACCTACCCGCGTGGTCTGTCAGCATCTTACCAGACTGCAGGAATGTAGTGCTTAATACTGCAAAGATTAGTTCTGTATCAACAATTTCAAGCTTCACAACTGAATCTTTAAAAGAAAAGATTGGTTCTTCGGATGATTCTAGCTCGAGATGGAGTTGGATTAGTGAACCTGTTGGCATTTCAAAGGCTGATTCATTCTCAAAATTTGGGCTAGTGGAGCAAATAAATACAACTGGTGATAGAAGTGATTACTTGTGGTATTCATTAAGCATCGATCTTGATGCTGGTACTCAAACTGTTCTTCACATTGAATCCCTTGGTCATGCTCTTCATGCTTTCATAAATGGGAAGCTTGCAGGCAGTGGAACGGGAACCAAAGACAAAGCTGCAGTCAAAGTAGACATCCCCGTCACACTAGTGGCTGGGAAGAACACAATTGATCTACTGAGTTTAACTGTTGGGCTCCAGAACTACGGAGCTTTTTTTGACTTAAGGGGTGCAGGAATCACTGGCCCTGTGATACTGAAAAGTTTGAACAATGGTAGCTCTCTTGATCTGTCCTCCCATAACTGGACATATCAGATTGGTCTTAAAGGTGAAGATTTGGGTCCATCCAGTGGAAGTTTTGGCCAGTGGAATTCACAATCTACTTTACCTATAAACCAACCATTGATTTGGTACAAGAAAAACTTCACTGCGCCCTCTGGTAGTGATCCAGTCGCAATTAACATGACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGAAAGAGCATTGGGAGGTACTGGCCTACGAATGTTGCTCCAAGTGATGGTTGTACTGATTCCTGCAATTATAGAGGGTCCTATCATGCATCCAAATGTCTCAGGAACTGTGGAAAGCCATCACAGGCATTATACCATGTACCACGATCATGGTTACGACCTGAAGGCAACACACTTGTTTTGTTTGAGGAAACCGGAGGCAACCCTGAGAAAATCACTTTTGCTACAAAACAGATAGCAAGTGTGTGTTCTTATGCATCTGAATCTCACCCTCTACATGTAGACTTATGGAATTCAGATGCAGAATCAGGAAGAAAAGTAGAGCCTGTACTGTTTCTGGAATGCCCTTATCCTAATCTGGTGATCTCTTCCATTAAATTTGCGAGTTTTGGAACACCTCAGGGGACTTGTGGGAACTTCAAACATGGAAACTGCAGCAGCAATAAGGCTCTATCCGTTGTGCAGAAGGGCTGCATTGGATCAAGCAGTTGTAGAATTGAGGTATCAATTAATACATTCGGAGATCCATGTGAAGGAGTAGCAAAGAATTTAGCTGTTGAAGCTTCTTGTGCATAG 2352 0.4252 MWPDIIQKSKYGGLDVIETYVFWNLHEPVQGQYNFEGSADLVKFVKTVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFKDEMKRFTAMIVDMMKKENLYASQGRPIILSQIENEYGNIDAAYGPAAKSYIKWAASMATSLDTGVPWVMCQQADAPDPIINTCNGFYCDQFNPNSNSKPKMWTENWSGWFLAFGGAVPYRPVEDLAFAVARFYQLGGTFNNYYMYHGGTNFGRTTGGPFISTSYDYDSPIDEYGTIRQPKWGHLKDLHKAIKLCEEALTATDPTITSIGPNIEAAVYKTGSTCAAFIANNNETSDANVTFNGNSYHLPAWSVSILPDCRNVVLNTAKISSVSTISSFTTESLKEKIGSSDDSSSRWSWISEPVGISKADSFSKFGLVEQINTTGDRSDYLWYSLSIDLDAGTQTVLHIESLGHALHAFINGKLAGSGTGTKDKAAVKVDIPVTLVAGKNTIDLLSLTVGLQNYGAFFDLRGAGITGPVILKSLNNGSSLDLSSHNWTYQIGLKGEDLGPSSGSFGQWNSQSTLPINQPLIWYKKNFTAPSGSDPVAINMTGMGKGEAWVNGKSIGRYWPTNVAPSDGCTDSCNYRGSYHASKCLRNCGKPSQALYHVPRSWLRPEGNTLVLFEETGGNPEKITFATKQIASVCSYASESHPLHVDLWNSDAESGRKVEPVLFLECPYPNLVISSIKFASFGTPQGTCGNFKHGNCSSNKALSVVQKGCIGSSSCRIEVSINTFGDPCEGVAKNLAVEASCA 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01979 783 CDD Gal_Rha_Lectin_BGal 701 782 - -
Viun11g01979 783 Gene3D - 699 783 IPR043159 -
Viun11g01979 783 Pfam Galactose binding lectin domain 705 782 IPR000922 GO:0030246
Viun11g01979 783 Gene3D - 392 531 - -
Viun11g01979 783 FunFam Beta-galactosidase 535 675 - -
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 559 573 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 250 266 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 230 245 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 193 208 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 586 602 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 FunFam Beta-galactosidase 235 361 - -
Viun11g01979 783 SUPERFAMILY Galactose-binding domain-like 526 691 IPR008979 -
Viun11g01979 783 FunFam Beta-galactosidase 362 514 - -
Viun11g01979 783 Pfam Beta-sandwich domain in beta galactosidase 293 360 IPR041392 -
Viun11g01979 783 FunFam Beta-galactosidase 1 286 - -
Viun11g01979 783 SUPERFAMILY Galactose-binding domain-like 344 516 IPR008979 -
Viun11g01979 783 Gene3D - 543 676 - -
Viun11g01979 783 SUPERFAMILY (Trans)glycosidases 1 287 IPR017853 -
Viun11g01979 783 PANTHER BETA-GALACTOSIDASE RELATED 2 724 IPR001944 GO:0004553|GO:0005975
Viun11g01979 783 Pfam Glycosyl hydrolases family 35 1 282 IPR031330 -
Viun11g01979 783 ProSiteProfiles SUEL-type lectin domain profile. 697 783 IPR000922 GO:0030246
Viun11g01979 783 Gene3D Glycosidases 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01979 Viun-Chr11 35454535 35460221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01979 1 636 Glycoside Hydrolase AT2G28470 73.447 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01979 - - gmx:100793198 1387.09