Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01489 ATGAGAATATCACAGATTCTGTTGGTTTTGCTTTGGTTCTTCTGCGTTTATGCTCCTTCTTCATTTGGGGCAAATGTCACGTACGACCACAGAGCATTGGTTATTGATGGCAAGCGCCGAGTCTTGGTCTCTGGTTCTATTCATTACCCTCGTAGCACTCCACAGATGTGGCCAGACATCATTCAGAAATCTAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATAATTTTGAAGGTAGGGGTGATTTGGTCAAATTTGTGAAGGTAGTAGCAGCAGCAGGTCTATATGTGCATCTCCGGATTGGTCCATATGCATGTGCAGAATGGAACTATGGTGGTTTCCCTCTTTGGCTGCATTTTATTCCTGGAATTAAGTTCCGAACTGATAACAAACAGTTTGAGGCAGAAATGAAGCGGTTCACAGCTAAGATTGTGGATATGATGAAGCAAGAGAATCTCTATGCCTCACAGGGAGGACCTATTATTCTGTCTCAGATTGAAAATGAGTATGGGAACATTGATGCGGATTATGGTCCTGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGATCCAATTATTAACACATGCAATGCATTTTACTGCGATCAATTCAAACCAAACTCTAATGCAAAACCAAAAATATGGACTGAGGGTTATACTGGATGGTTAGTGTTTCTTTCATTTGGTGATGCCATACCTCACAGACCAGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTACCAGCGAGGTGGAACTTTTCAAAATTACTATATGTACCATGGAGGGACTAATTTTGGCCGGGCTTCTGGTGGACCTTTCGTTGCTAGTAGTTATGATTACGATGCACCAATTGATGAGTATGGAATTATTAGACAGCCTAAGTGGGGCCACCTTAAAGACGTACATAAGGCCATAAAACTTTGTGAAGAAGCACTGCTAGCTACTGATCCAACAATTACATCTCTTGGACCAAATACAGAGGTAATAAGTGGTCCTTTTAAATTGAGGCCAGAATTTCTGGATTATCTTAGTGGCCTAAATGCTGCAGTTTACAAGACAGGAGCTGTATGTGCAGCCTTCCTTGCCAACGTTGACACATCTGATGCAAAAGTGACCTTCAATGGAAATTCATATCAATTGCCCGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACCGCAAAGATTAATTCTGCATCTATGATTTCAAGCCTCGCAACTGAATCTTTAAAAGAAGAGGTTGGTTCTTTGGATGATTCTGGCTCAGGATGGACTTGGATTGGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGATTACTGGAGCAAATAAATACAACTGCTGATAGAAGTGATTATTTGTGGTACTCATTAAGAGTAAGATCAATTGTTCATGACTGTCCCTTCCTAAAATGTTCAGTTCTTTCTGTATTTCAATGGAGAACTTTTTCTGGGAGTGGAACAGGCAACCATGAGAAATCTAAGGTCAATGTAAACATTCCCATCACACTAGTGGCTGGGAAGAACACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATCACTGGACCAGTGATATTGAAAGGTTTGAAGAATGGAAGCACTCTTGATCTCTCGTCCCGGAAGTGGACATATCAGGTTGGCCTTAAAGGTGAAGATTTAGGTCTATCTAGTGGCAGTTCTGGACAGTGGAATTCACAATCTACCTTACCTACAAATCAACCGTTGATTTGGTACAAGACAAACTTCGTTGCTCCCTCTGGCAGTAATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGTGCATTGGGCGATACTGGCCTACATATGTCTCTCCAAAAGGTGGTTGTACAGATTCATGCAATTATAGAGGGGCCTACCATCCATCCAAATGTCTAAAGAACTGTGGAAAACCATCACAGACATTATACCATGTACCGCGATCATGGTTACAACCAGATAGCAACACACTTGTATTGTTTGAGGAAAGTGGAGGCAACCCTACACAAATCTCTTTTGCTACAAGACAGATAGGAAGCGTGTGTTCACATGTATCTGAATCTCACCCACCACCTGTAGACTTGTGGAATTCAGATACAGAATCAGGAAGAAAACTAGTTCCTTTAGTGTCACTGGAGTGCCCTTATCCTAATCAGGTGATCTCATCCATTATATTTGCAAGTTTTGGAACGCCTCATGGGACTTGTGGGGACTTCAAACATGGGCGCTGCCAAAGCAATAAGGCTCTATCCATTGTGCAGAAGGCCTGCATTGGTTCAAGCAGCTGTAGAGTTGAACTATCAATTAATGCATTTGGAGATCCATGCAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2568 0.4237 MRISQILLVLLWFFCVYAPSSFGANVTYDHRALVIDGKRRVLVSGSIHYPRSTPQMWPDIIQKSKDGGLDVIETYVFWNLHEPVRGQYNFEGRGDLVKFVKVVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNKQFEAEMKRFTAKIVDMMKQENLYASQGGPIILSQIENEYGNIDADYGPAAKSYIKWAASMATSLDTGVPWVMCQQLDAPDPIINTCNAFYCDQFKPNSNAKPKIWTEGYTGWLVFLSFGDAIPHRPVEDLAFAVARFYQRGGTFQNYYMYHGGTNFGRASGGPFVASSYDYDAPIDEYGIIRQPKWGHLKDVHKAIKLCEEALLATDPTITSLGPNTEVISGPFKLRPEFLDYLSGLNAAVYKTGAVCAAFLANVDTSDAKVTFNGNSYQLPAWSVSILPDCKNVVLNTAKINSASMISSLATESLKEEVGSLDDSGSGWTWIGEPIGISKADSFSKFGLLEQINTTADRSDYLWYSLRVRSIVHDCPFLKCSVLSVFQWRTFSGSGTGNHEKSKVNVNIPITLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSTLDLSSRKWTYQVGLKGEDLGLSSGSSGQWNSQSTLPTNQPLIWYKTNFVAPSGSNPVAIDFTGMGKGEAWVNGQCIGRYWPTYVSPKGGCTDSCNYRGAYHPSKCLKNCGKPSQTLYHVPRSWLQPDSNTLVLFEESGGNPTQISFATRQIGSVCSHVSESHPPPVDLWNSDTESGRKLVPLVSLECPYPNQVISSIIFASFGTPHGTCGDFKHGRCQSNKALSIVQKACIGSSSCRVELSINAFGDPCKGVAKSLAVEASCA 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01489 855 Gene3D - 585 747 - -
Pumo11g01489 855 CDD Gal_Rha_Lectin_BGal 773 854 - -
Pumo11g01489 855 ProSiteProfiles SUEL-type lectin domain profile. 773 855 IPR000922 GO:0030246
Pumo11g01489 855 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Pumo11g01489 855 FunFam Beta-galactosidase 607 747 - -
Pumo11g01489 855 SUPERFAMILY (Trans)glycosidases 24 344 IPR017853 -
Pumo11g01489 855 Coils Coil 143 163 - -
Pumo11g01489 855 Gene3D - 773 855 IPR043159 -
Pumo11g01489 855 PANTHER BETA-GALACTOSIDASE RELATED 14 777 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 FunFam Beta-galactosidase 22 343 - -
Pumo11g01489 855 Gene3D Glycosidases 20 343 - -
Pumo11g01489 855 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Pumo11g01489 855 Pfam Galactose binding lectin domain 777 854 IPR000922 GO:0030246
Pumo11g01489 855 SUPERFAMILY Galactose-binding domain-like 599 764 IPR008979 -
Pumo11g01489 855 Pfam Beta-sandwich domain in beta galactosidase 380 436 IPR041392 -
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 631 645 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Pumo11g01489 855 PRINTS Glycosyl hydrolase family 35 signature 658 674 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01489 Pumo-Chr11 45652064 45679092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01489 24 708 Glycoside Hydrolase AT2G28470 71.531 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01489 - - gmx:100793198 1478