Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01957 ATGCACAGCTCCTCACCACTAAGTCAGGTGGCATCACCATTCTTGCACCTGATGGATGACAGTTCCTTCTCTCAACTCAAACCAGGCTTCCTCAACTCTCTTTCCGATGGCCAAAAGCTCGAGCTCTTACAGTTCCATGTTCTGTCAGAATATGTGTCTAGCTCCAACTTTGATACTCTAACCAACACTGTGAGAACACTTGCAGGAGCTAAACCTGGAAAAGTGCAACTGAACGTTATAAGTTACAGAGGCAGTGTGAACATCTCAACCGCACCAGCAAAGCCTTCAGCAAAGACTCCTAATGCAGATAAGGAGAAGGTACTGTCTCCAAATTCCTCAGAACCATCTAAGATTAATTCCACAGTGGAGAAGTCTGGCACTACAGAAATCAATGTTCATGGTAAGTGGGTGTTCCTTGTTCTTGGAGTACTTCTCGTGACTGCATTGTCATCGTAA 456 0.4496 MHSSSPLSQVASPFLHLMDDSSFSQLKPGFLNSLSDGQKLELLQFHVLSEYVSSSNFDTLTNTVRTLAGAKPGKVQLNVISYRGSVNISTAPAKPSAKTPNADKEKVLSPNSSEPSKINSTVEKSGTTEINVHGKWVFLVLGVLLVTALSS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01957 151 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19 92 IPR045003 -
Vimu5g01957 151 SUPERFAMILY FAS1 domain 20 91 IPR036378 -
Vimu5g01957 151 Gene3D FAS1 domain 17 128 IPR036378 -
Vimu5g01957 151 MobiDBLite consensus disorder prediction 91 124 - -
Vimu5g01957 151 Pfam Fasciclin domain 20 90 IPR000782 -
Vimu5g01957 151 MobiDBLite consensus disorder prediction 105 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01957 Vimu-Chr5 31405760 31406322 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01957 - - gmx:100776667 184.111