Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01959 ATGATGAAAAAGCAATGTCTTTTCTCTTTCTCAGCAGCACTGCTAGTTTCATTTTTGTATTCCACCACCACTTTAGCCCAATTATCACCGGCTTCTGCTCCTCTTAAACCAGTTCAACCTACTCCTACTCCACCAGCTGAGGCTCCTAAACAGCCATTGGTTCCTTCATTGCCACAGTCACCAAGTGATGCCACTCCCGACACTACAGCTGTAGACATTGTTGGAATCCTGAGGCAGGCCAAGTCATTCAACATCCTTATCCGCCTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAGCTCCTCACCACTAAGTCAGGTGGCATCACCATTCTTGCACCTGATGACAGTTCCTTCTCTCAACTCAAACCAGGCTTCCTCAACTCTCTTTCTGATGGCCAAAAGCTCGAGCTCTTACAGTTCCATGTTCTGTCAGACTATGTTTCTAGCTCCAACTTTGATACTCTAACCAACCCAGTGAGAACACTTGCAGGAGCTAAACCTGGAAAGGTAGAACTGAACGTGATAAGTTACGGAGGCAGTGTGAACATCTCAACGGGTGAGGTTAATACCACCATCACTGGCATTGTATACACAGATAAGCATCTTGCTATTTATAAGGTAGGGAAGGTGCTTCTTCCTACGGATTTTTTTACTGTTGCTAAAGCACCGGCAAAGGGACCATCTTTGGCACCAGAACCTTCAGCAAAGGCTCCTAAAGCTGATAAAGAGAAGCCACTGTCTCCAGATTCCTCAGAATCATCTGAAATTAATTCCACAAGCGACAACTCTGGCACTGTGAACATCAACGTACGAGGAAAGTGGGTGTCCCTTGTTCTTGGAGGACTTATCCTGCTTGCATTGTCATCATGA 879 0.4562 MMKKQCLFSFSAALLVSFLYSTTTLAQLSPASAPLKPVQPTPTPPAEAPKQPLVPSLPQSPSDATPDTTAVDIVGILRQAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSSFSQLKPGFLNSLSDGQKLELLQFHVLSDYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIVYTDKHLAIYKVGKVLLPTDFFTVAKAPAKGPSLAPEPSAKAPKADKEKPLSPDSSESSEINSTSDNSGTVNINVRGKWVSLVLGGLILLALSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01959 292 SMART fasc_3 112 217 IPR000782 -
Vimu5g01959 292 SUPERFAMILY FAS1 domain 68 217 IPR036378 -
Vimu5g01959 292 Gene3D FAS1 domain 55 217 IPR036378 -
Vimu5g01959 292 MobiDBLite consensus disorder prediction 32 66 - -
Vimu5g01959 292 FunFam Fasciclin-like arabinogalactan protein 11 56 216 - -
Vimu5g01959 292 MobiDBLite consensus disorder prediction 35 56 - -
Vimu5g01959 292 ProSiteProfiles FAS1/BIgH3 domain profile. 70 214 IPR000782 -
Vimu5g01959 292 MobiDBLite consensus disorder prediction 227 265 - -
Vimu5g01959 292 Pfam Fasciclin domain 82 216 IPR000782 -
Vimu5g01959 292 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 271 IPR045003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01959 Vimu-Chr5 31409342 31410666 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01959 - - gmx:100776667 435.261