Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0701 ATGAGAGCATCACAGACTCTGTTTCTTTTGCTTTGGTTCTTCTGCATTTATGCCTCTACTTCGTTTTCCGCAAATGTCACTTACGACCATAGAGCATTGGTCATTGATGGCAAGCGCAGAGTCTTGGTCTCTGGTTCTATCCATTACCCTCGTAGCACTCCAGAGATGTGGCCAGACCTCATTCAAAAGTCCAAAGATGGAGGACTTGATGTTATTGAGACTTATGTTTTCTGGAACTTACACGAACCGGTTCAAGGCCAGTATAATTTTGAAGGTAGGGCAGATTTGGTTAAATTTGTGAAGACAGTAGCAGCAGCAGGCCTATACGTGCATCTCCGGATTGGTCCATACGCATGTGCTGAATGGAACTATGGCGGTTTCCCTCTTTGGCTACATTTTATACCAGGAATTCAATTCCGAACTGATAACAAACCATTTGAGGAAGAAATGAAGCGGTTCACCGCTAAAATTGTAGATATGATGAAGCAAGAGAACCTCTATATGTCACAGGGAGGACCTATTATTTTGTCTCAGATTGAAAATGAGTATGGGAACATTGATGCGGATTATGGTCCAGCTGCTAAATCCTATATCAAATGGGCAGCATCAATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGACCCAATTATTAACACATGCAATGCATTTTACTGTGACCAATTCCAACCGAATTCTAAGGCAAAACCAAAAATATGGACGGAGGGTTATACTGGATGGTTTCTTGCATTTGGTGATGCTTTACCTCACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGAGGGGGAACTTTCAACAATTACTATATGTACCATGGAGGGACAAACTTTGGCCGGGCTTCTGGTGGGCCTTTTGTTGCTAGTAGTTATGATTATGATGCTCCAATTGATGAGTATGGAACTATTAGACAGCCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCATTAAACTTTGTGAAGAAGCACTGATAGCTACTGATCCAACAATTACATCTCTTGGACCAAATATAGAGGTTGCAGTTTACAAGACTGGAGCTGTGTGTTCCGCTTTCCTTGCCAACATTGCCACATCTGATGCAAAAGTGACCTTCAATGGAAATTCATATCACCTGCCCGCATGGTCTGTGAGCATCCTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATAAATTCTGCATCTGTGATTTCAAGCTTTACAACTGAATCTTTAAAAGATGTTGGCTCGTTGGATGATTCTTACTCGGGATGGAGTTGGATTAGTGAACCTATAGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGGTTGCTGGAGCAAATAAATACAACTGGTGATAGAAGTGATTATTTGTGGTACTCATTAAGCATTGATCTTGATACTGATACTCAAGCTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCGTGCTTTCATAAATGGGAAACTTGCAGGGAGTGGAATGGGCAACCATGAGAAAGCTAACGTCAAAGTAGACATCCCCATCACTCTAGTGGCTGGGAAGAATACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATCACTGGCCCTGTGATATTAAAAGGTTTGAAAAATGGCAGCTCTCTGGATCTGTCCTCCCATATGTGGACATATCAGATTGGTATTAAAGGTGAAGATTTAGGTCCATCTGGTGACAGTTCTGGACAGTGGAATTCACAATCTACCCTACCTGTACACCAACCCTTCATTTGGTACAAGACAAACTTCTTTGCTCCCTCTGGTAGCAATCCAGTTGCAATTGACTTCACAGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGACGATACTGGCCTACGTATGCCTCTCCAAGCGGTGGTTGTACTGATTCGTGCAATTATAGAGGGTCCTATCAAGCATCCAAATGCCTCCAGAACTGTGGAAAGCCATCACAGACATTATACCATGTACCAAGATCATGGTTACGACCTCAAGGCAACACACTAGTACTGTTTGAGGAAAGTGGAGGCAACCCTAAGCAAATCAGTTTTGCTACAAAACAGATAGGAAGCGTGTGTTCTCATGTATCTGAATCTCACCCTCCACCTGTAGACTTATGGAATTCTGACGCAGAATCAGGAAGAAAAGTAGGGCCTGTACTGTTACTGGAATGCCCTTATCCTAAGCAGGTGATCTCTTCCATCAAATTTGCTAGTTTTGGAACACCACAGGGGACTTGTGGAAACTTCAAACACGGACGCTGCAGCAGCAATAAGGCTCTATCCATTGTGCAGAAGGGCTGCATAGGATCAAGCAGTTGTAGAATTGAACTATCAATTAATACGTTCGGAGATCCATGTAAAGGAGTAGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATGA 2511 0.4313 MRASQTLFLLLWFFCIYASTSFSANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFVKTVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEEEMKRFTAKIVDMMKQENLYMSQGGPIILSQIENEYGNIDADYGPAAKSYIKWAASMATSLDTGVPWVMCQQLDAPDPIINTCNAFYCDQFQPNSKAKPKIWTEGYTGWFLAFGDALPHRPVEDLAFAVARFFQRGGTFNNYYMYHGGTNFGRASGGPFVASSYDYDAPIDEYGTIRQPKWGHLKDLHKAIKLCEEALIATDPTITSLGPNIEVAVYKTGAVCSAFLANIATSDAKVTFNGNSYHLPAWSVSILPDCKNVVLNTAKINSASVISSFTTESLKDVGSLDDSYSGWSWISEPIGISKADSFSKFGLLEQINTTGDRSDYLWYSLSIDLDTDTQAVLHIESLGHALRAFINGKLAGSGMGNHEKANVKVDIPITLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSSLDLSSHMWTYQIGIKGEDLGPSGDSSGQWNSQSTLPVHQPFIWYKTNFFAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYASPSGGCTDSCNYRGSYQASKCLQNCGKPSQTLYHVPRSWLRPQGNTLVLFEESGGNPKQISFATKQIGSVCSHVSESHPPPVDLWNSDAESGRKVGPVLLLECPYPKQVISSIKFASFGTPQGTCGNFKHGRCSSNKALSIVQKGCIGSSSCRIELSINTFGDPCKGVAKSLAVEASCA* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0701 836 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 SUPERFAMILY Galactose-binding domain-like 580 744 IPR008979 -
Vra2g0701 836 Pfam Galactose binding lectin domain 758 835 IPR000922 GO:0030246
Vra2g0701 836 PANTHER BETA-GALACTOSIDASE 5 830 - -
Vra2g0701 836 PANTHER BETA-GALACTOSIDASE RELATED 5 830 IPR001944 GO:0004553|GO:0005975
Vra2g0701 836 Gene3D - 752 836 IPR043159 -
Vra2g0701 836 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Vra2g0701 836 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Vra2g0701 836 Pfam Beta-sandwich domain in beta galactosidase 345 414 IPR041392 -
Vra2g0701 836 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Vra2g0701 836 Gene3D - 445 575 - -
Vra2g0701 836 Gene3D - 677 731 - -
Vra2g0701 836 Gene3D - 577 661 - -
Vra2g0701 836 ProSiteProfiles SUEL-type lectin domain profile. 750 836 IPR000922 GO:0030246
Vra2g0701 836 Gene3D Glycosidases 19 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0701 Vra-Chr2 5971869 5978214 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0701 23 689 Glycoside Hydrolase AT2G28470 75.185 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0701 - - gmx:100793198 1540.01