Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0780 Acco08g0263 Accr13g00278 . . . . . . Alju10g0278 . . . Arst3g00227 . Bisa02g3706 . . . Dere07g0848 . . Glsi04g0332 . . . . . . . . . . . . . . . . . . . . Mibi07g0272 . Phac11g01198 . Prci6g0396 Psa7g3340 . . . . . . Sto12g0277 . . . . . . . Vivi5g02410 .
Pvu11g0781 . . Adu03g00176 Aed5g0502 Aev04g3027 . Ahy13g0364 Aip03g00374 . . . Apr3g1379 . . . . Car06g03503 Cca04g00768 . . . . . Gma11g01661 . Gso11g1534 . . . . . . . Lasa7g01665 . . . . . Mal7g2116 Mepo2g01901 . . Mtr4g1755 Phac11g01149 Phco9g00853 . Psa7g5139 . . Rops3g00926 . Spst11g01377 . . Tpr4g1719 Trre7g01635 . Vian5g01195 Vifa6g00631 Vimu5g01950 Viun11g01972 . Vra2g0706
Pvu11g0782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0783 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g02588 . . . . . . . . . . . . . . .
Pvu11g0784 . . . Aed5g0173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0778 Chr11 7004675 7005605 +
Pvu Pvu11g0779 Chr11 7015427 7016202 +
Pvu Pvu11g0780 Chr11 7016263 7021996 -
Acco Acco08g0263 Chr08 1965681 1976149 +
Accr Accr13g00278 Chr13 2700043 2706552 +
Alju Alju10g0278 Chr10 2160253 2166560 +
Arst Arst3g00227 Chr3 1588120 1594682 -
Bisa Bisa02g3706 Chr02 90080330 90086457 -
Dere Dere07g0848 Chr07 11966605 11973274 -
Glsi Glsi04g0332 Chr04 2126296 2131788 +
Mibi Mibi07g0272 Chr07 3426717 3432686 +
Phac Phac11g01198 Chr11 8218322 8223345 -
Prci Prci6g0396 Chr6 2527533 2534809 +
Psa Psa7g3340 Chr7 256061422 256065401 -
Sto Sto12g0277 Chr12 1686695 1691324 +
Vivi Vivi5g02410 Chr5 102151155 102156185 -
Pvu Pvu11g0781 Chr11 7025236 7026114 -
Adu Adu03g00176 Chr03 1599948 1601128 +
Aed Aed5g0502 Chr5 3653494 3654447 -
Aev Aev04g3027 Chr04 30010565 30011179 +
Ahy Ahy13g0364 Chr13 3633857 3634971 -
Aip Aip03g00374 Chr03 3556707 3557887 +
Apr Apr3g1379 Chr3 28272714 28273861 +
Car Car06g03503 Chr06 65912367 65913536 -
Cca Cca04g00768 Chr04 7674151 7675395 -
Gma Gma11g01661 Chr11 17956199 17957260 +
Gso Gso11g1534 Chr11 17818850 17820034 +
Lasa Lasa7g01665 Chr7 410364320 410365210 +
Mal Mal7g2116 Chr7 75421247 75422143 -
Mepo Mepo2g01901 Chr2 27766144 27767503 -
Mtr Mtr4g1755 Chr4 30284554 30285807 -
Phac Phac11g01149 Chr11 7716613 7720091 +
Phco Phco9g00853 Chr9 6617392 6618268 -
Psa Psa7g5139 Chr7 450186249 450187264 +
Rops Rops3g00926 Chr3 11822806 11823681 -
Spst Spst11g01377 Chr11 38221346 38222197 +
Tpr Tpr4g1719 Chr4 17702722 17703984 +
Trre Trre7g01635 Chr7 12503690 12504592 +
Vian Vian5g01195 Chr5 34448959 34449801 +
Vifa Vifa6g00631 Chr6 239277155 239278039 +
Vimu Vimu5g01950 Chr5 31369205 31370056 +
Viun Viun11g01972 Chr11 35410794 35411922 -
Vra Vra2g0706 Chr2 6017112 6018227 -
Pvu Pvu11g0782 Chr11 7027035 7031151 -
Pvu Pvu11g0783 Chr11 7036991 7041998 -
Pste Pste1g02588 Chr1 9808922 9816001 +
Pvu Pvu11g0784 Chr11 7043506 7046595 -
Aed Aed5g0173 Chr5 1239987 1242926 +
Pvu Pvu11g0785 Chr11 7065347 7069479 -
Pvu Pvu11g0786 Chr11 7072157 7074604 +
Pvu Pvu11g0787 Chr11 7083593 7083807 +