Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01204 ATGAAAGTGACACAGATTCTGTTGGTTCTTGCTTGGTTCTTCTGCATTTATGCCTCTACTTCGTTTTCCGCAAATGTCACTTACGACCATAGAGCATTGGTCATTGATGGAAAGCGCCGAGTCTTGGTATCTGGTTCTATACATTACCCTCGTAGCACTCCAGAGATCGTGGATATGATGAAGAAAGAGAACCTCTATGCATCACAGGGAGGACCAATTATTTTGTCTCAGGTCGAAAATGAATATGGAAACATTGATGCGGCCTATGGTTCTGCTGCTAAATCCTACATCAAATGGGCAGCATCAATGGCAACATCTTTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGGATGATGCTCCTGACCCAATTATCAACACATGCAATGGATTTTACTGTGATCAATTCAAACCAAACTCTCTCTCAAAACCAAAAATGTGGACTGAGAACTGGAGTGGATGGTTTCTTTCATTTGGTGGTGCTGTGCCTTACAGACCAGTGGAAGATCTTGCTTTTGCTGCTGCAGTTTACAAGACAGGATCTGCCTGTGCTGCCTTCCTTGCCAACAACGATGACACATCTGATGCAAATGTCACCTTCAATGGAAATTCATATGACCTGCCCGCGTGGTCTGTCAGCATCTTACCAGACTGCAGGAATGTAGTGCTTAATACTGCAAAGATTAGTTCTGTATCTACAATTTCAAGCTTCACAACTGAACCTTTAAAAGAAGAGATTGGTTCTTCGGATGATTCTTGCTCAGGATGGAGTTGGATTAGTGAACCTGTTGGCATTTCAAAGGCTGATTCATTCTCAAAATTTGGGCTACTGGAGCAAGTAAACACAACTGGTGATAGAAGTGATTACTTGTGGTACTCATTAAGCATCGATCTTGATGCTGGTACTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCATGCTTTCATAAATGGGAAGCTTGCAGGCAGTGGAACGGGAAACAAAGTCAAAGTAGACATCCCCGTCACACTAGTGGCTGGGAAGAACACAATTGATTTACTGAGTTTAACTGTTGGGCTCAAGAACTACGGAGCATTTTTTGACACAGCGGGTGCAGGAATCACTGGCCCTGTGATACTGAAAAGTTTGGCCAATGGTAGCTCTCTTGATCTGTCCTCCCAGAATTGGACATATCAGATAGGTCTTAAAGGTGAAGATTTGGGGCCATCTAGTGGCAGTTCTGGCCAGTGGAATTCACAATCTACTTTACCGACAAACCAAACATTGATTTGGTACAAGACAAACTTTGCTTCCCCCTCTGGTAGTGATCCAGTTGCTATTAACTTGACGGGGATGGGAAAAGGTGAGGCTTGGGTGAATGGACAGAGCATTGGGAGATACTGGCCTACAAATGCTTCTCCAAATGATGGTTGTACTGATTCCTGCAATTATAGAGGAGCCTATCAAGCATCCAAATGTCTCAAGAACTGTGGAAAGCCATCACAAACATTATACCATGTACCACGATCATGGTTACAACCTGAAAGCAACACACTTGTTTTGTTTGAGGAAATTGGAGGCAACCCTGAGCAAATCACTTTTGCTACAAAACAGATTGCAAGTGTGTGTTCTCATGTATCTGAATCTCACCCTCCTCATGTAGACTTGTGGAATTCAGATGCAGAATCAGGAAGAACAGTAGGGCCTGTACTGTTACTGGAATGCCCTTACCCTAATCAGATGATCTCCTCCATTAAATTTGCAAGTTTTGGAACACCTCAAGGGACTTGTGGAAACTTTAAACATGGAAACTGCAGTAGCAATAAGGCTCTATCCGTTGTGCAGAAGGGCTGCATTGGATCAAGCAGTTGTAGAATTGAACTATCAATTAATACGTTCGGAGATCCATGTAAAGGAGTGGCAAAGAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 1947 0.4314 MKVTQILLVLAWFFCIYASTSFSANVTYDHRALVIDGKRRVLVSGSIHYPRSTPEIVDMMKKENLYASQGGPIILSQVENEYGNIDAAYGSAAKSYIKWAASMATSFDTGVPWVMCQQDDAPDPIINTCNGFYCDQFKPNSLSKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAAAVYKTGSACAAFLANNDDTSDANVTFNGNSYDLPAWSVSILPDCRNVVLNTAKISSVSTISSFTTEPLKEEIGSSDDSCSGWSWISEPVGISKADSFSKFGLLEQVNTTGDRSDYLWYSLSIDLDAGTQTVLHIESLGHALHAFINGKLAGSGTGNKVKVDIPVTLVAGKNTIDLLSLTVGLKNYGAFFDTAGAGITGPVILKSLANGSSLDLSSQNWTYQIGLKGEDLGPSSGSSGQWNSQSTLPTNQTLIWYKTNFASPSGSDPVAINLTGMGKGEAWVNGQSIGRYWPTNASPNDGCTDSCNYRGAYQASKCLKNCGKPSQTLYHVPRSWLQPESNTLVLFEEIGGNPEQITFATKQIASVCSHVSESHPPHVDLWNSDAESGRTVGPVLLLECPYPNQMISSIKFASFGTPQGTCGNFKHGNCSSNKALSVVQKGCIGSSSCRIELSINTFGDPCKGVAKSLAVEASCA 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01204 648 Gene3D - 563 648 IPR043159 -
Vian5g01204 648 Gene3D - 378 541 - -
Vian5g01204 648 CDD Gal_Rha_Lectin_BGal 565 647 - -
Vian5g01204 648 PRINTS Glycosyl hydrolase family 35 signature 424 438 IPR001944 GO:0004553|GO:0005975
Vian5g01204 648 PRINTS Glycosyl hydrolase family 35 signature 451 467 IPR001944 GO:0004553|GO:0005975
Vian5g01204 648 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vian5g01204 648 PANTHER BETA-GALACTOSIDASE RELATED 175 589 IPR001944 GO:0004553|GO:0005975
Vian5g01204 648 FunFam Beta-galactosidase 400 540 - -
Vian5g01204 648 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 70 82 IPR019801 GO:0004553|GO:0005975
Vian5g01204 648 Pfam Galactose binding lectin domain 570 647 IPR000922 GO:0030246
Vian5g01204 648 SUPERFAMILY Galactose-binding domain-like 392 556 IPR008979 -
Vian5g01204 648 Gene3D - 227 377 - -
Vian5g01204 648 SUPERFAMILY Galactose-binding domain-like 213 380 IPR008979 -
Vian5g01204 648 Pfam Beta-sandwich domain in beta galactosidase 175 229 IPR041392 -
Vian5g01204 648 SUPERFAMILY (Trans)glycosidases 25 176 IPR017853 -
Vian5g01204 648 FunFam Beta-galactosidase 229 379 - -
Vian5g01204 648 Gene3D Glycosidases 59 183 - -
Vian5g01204 648 ProSiteProfiles SUEL-type lectin domain profile. 562 648 IPR000922 GO:0030246
Vian5g01204 648 Pfam Glycosyl hydrolases family 35 56 176 IPR031330 -
Vian5g01204 648 Gene3D Glycosidases 17 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01204 Vian-Chr5 34520738 34526206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01204 23 56 Glycoside Hydrolase AT2G28470 88.235 4.57e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01204 - - gmx:100793198 813.913