Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00763 ATGAAGAAGCAATCTCTCTTGTCCTTCCCACTAGTACTGCTACTTTCATTTTTGTATTGCACCACCACTTTAGCCCAATTATCACCAGCTTCTGCTCCCCTAAAACCACCCCAACCTAGCCCTACCCCACCAGCTGAAGCTCCTAAGCAACCATTGGTTCCTTCCTTACCACAATCACCAAGTGATTCAGCCCCGGACACTGCAGCTCTTGACGTAGTTGGAATCCTGAGGAAGGCTAAGTCATTCAACATCTTAATCCGTCTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAGCTCCTCACTACTAAATCTGGTGGCATCACCATTCTCGCACCTGATGATAGTGCCTTCTCAGAACTCAAAGCAGGCTTCCTCAACTCTCTTTCTGATGGACAAAAACTCGAGCTCTTACAATTCCACGTTATTTCAGACTATGTATCTAGTTCTAACTTTGATACTCTTACAAATCCTGTGAGAACACTTGCAGGAGCTAAACCTGGAAAGGTGGAACTGAATGTGATAAGCTACGGTGGGAGTGTGAACATATCAACAGGTGAGGTTAACACAACCATCACTGGCATTATATATACGGATAAACATCTTGCTATATATAAGGTGGGAAAGGTGCTTCTTCCAATGGACTTCTTTGCTGTTGCTAAGGCACCTGCAAAGGGACCTTCATTGGCTCCACAACCTTCAAGTGATGCGGCAAAGGCGCCAAAAGCTGATAAGGATGAATCATCATCTACGGATTCGTCACAGGTTAATGCCACTGAACAGAACTCAGGGACCGAGAAGATCAACGTGTTTGGAAAGTGGGTGTCCCTTGTTGTTGGACTAGTTCTCGTGAGTGTAATGACAACATAA 876 0.4486 MKKQSLLSFPLVLLLSFLYCTTTLAQLSPASAPLKPPQPSPTPPAEAPKQPLVPSLPQSPSDSAPDTAALDVVGILRKAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIIYTDKHLAIYKVGKVLLPMDFFAVAKAPAKGPSLAPQPSSDAAKAPKADKDESSSTDSSQVNATEQNSGTEKINVFGKWVSLVVGLVLVSVMTT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00763 291 Gene3D FAS1 domain 54 215 IPR036378 -
Cca04g00763 291 SUPERFAMILY FAS1 domain 62 216 IPR036378 -
Cca04g00763 291 MobiDBLite consensus disorder prediction 228 264 - -
Cca04g00763 291 Pfam Fasciclin domain 81 215 IPR000782 -
Cca04g00763 291 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 291 - -
Cca04g00763 291 SMART fasc_3 111 216 IPR000782 -
Cca04g00763 291 ProSiteProfiles FAS1/BIgH3 domain profile. 69 213 IPR000782 -
Cca04g00763 291 MobiDBLite consensus disorder prediction 32 55 - -
Cca04g00763 291 MobiDBLite consensus disorder prediction 30 65 - -
Cca04g00763 291 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 291 IPR045003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00763 Cca-Chr4 7647589 7648595 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00763 - - gmx:100819833 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00763 04 7647589 7648595 Cca04g00763 04 7647589 7648595 ECH