Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1320 . . . . . . . . . . . Ahy16g2940 . Aip06g03143 . . . Amo16g3558 . . . . . . . . Bva12g01927 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0807 . . . . . . . . . . . . . . . . . . . Sto5g1305 . . . . . . . . . . . . . . . . . .
Vvi16g1321 Acco10g2555 . Accr4g00226 . . . . . . . . Ahy16g2941 . Aip06g03144 Alju08g0229 . . Amo16g3559 Apr1g0647 . Arst8g00506 . Bach12g00992 . Bisa09g0905 . Bva12g01928 Bva06g02993 . . . . Dere04g1238 . . . Enph1g1829 . Glsi08g0943 . . . . . . . . . Lal17g0580 . Lal21g0575 . . . Lan15g0665 . Lan15g0665 . . . Lapu9g01327 . Lasa5g03051 . Lele01g0185 Lele02g0185 Lele03g0189 Lele04g0182 . . . . Lja1g4801 . . . Mepo3g06569 . Mesa9g04111 . Mibi05g0192 . . . . . Phco7g00408 . Prci15g0275 . . . Pste2g00903 . . . . . Pumo10g01430 . Pvu9g0522 . Rops10g02131 . Seca4g02619 . Spst9g00415 . . . Sto9g2731 Sto5g1303 . . Trre5g03916 . . . Vian4g01346 . Vifa2g02866 . Vimu10g02106 . Viun9g02136 . Vivi3g02788 . . .
Vvi16g1322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1323 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01929 Bva06g02992 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0806 . . . . . . . . . . . . . . . . . . . Sto5g1302 . . . . . . . . . . . . . . . . . .
Vvi16g1324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1325 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1327 . . . . Adu08g00403 . . . Aev08g0779 . Ahy17g2563 . Aip07g02758 . . . Amo17g2471 . Apr1g0648 . Arst8g00508 . Bach12g00990 . . . Bva12g01931 Bva06g02991 . . . . . . Dod08g2019 . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g01328 . Lasa5g03050 . . . . . . . . . Lja1g4802 . . . Mepo3g06568 . Mesa9g04110 . . . . . Phac9g01366 . Phco7g01446 . . . Psa5g1768 . Pste2g03465 . . . . . Pumo10g01428 . Pvu9g0523 . Rops10g02130 . Seca4g02613 . Spst9g01490 . . . . Sto5g1301 . . Trre5g03915 . . . Vian4g01347 . Vifa2g02865 . Vimu10g02107 . Viun9g02138 . Vivi3g02789 . . .
Vvi16g1328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1319 Chr16 21712144 21712399 +
Vvi Vvi16g1320 Chr16 21731310 21733180 +
Ahy Ahy16g2940 Chr16 143973077 143975727 +
Aip Aip06g03143 Chr06 127028501 127030458 +
Amo Amo16g3558 Chr16 145686950 145689079 +
Bva Bva12g01927 Chr12 15372877 15374239 +
Psa Psa6g0807 Chr6 28123497 28125810 -
Sto Sto5g1305 Chr5 8880886 8882098 -
Vvi Vvi16g1321 Chr16 21734000 21737353 +
Acco Acco10g2555 Chr10 36603561 36607286 -
Accr Accr4g00226 Chr4 2270521 2274229 +
Ahy Ahy16g2941 Chr16 143975551 143979636 -
Aip Aip06g03144 Chr06 127030542 127034791 -
Alju Alju08g0229 Chr08 1681818 1685591 +
Amo Amo16g3559 Chr16 145689336 145693490 -
Apr Apr1g0647 Chr1 7780971 7786988 +
Arst Arst8g00506 Chr8 7229077 7231876 +
Bach Bach12g00992 Chr12 7037381 7041273 -
Bisa Bisa09g0905 Chr09 13113598 13118065 +
Bva Bva12g01928 Chr12 15375190 15379893 +
Bva Bva06g02993 Chr06 18630454 18634499 -
Dere Dere04g1238 Chr04 13844583 13848534 -
Enph Enph1g1829 Chr1 43226370 43232306 -
Glsi Glsi08g0943 Chr08 6959632 6963157 +
Lal Lal17g0580 Chr17 4128231 4132822 -
Lal Lal21g0575 Chr21 4272352 4278367 -
Lan Lan15g0665 Chr15 15305479 15310218 +
Lan Lan15g0665 Chr15 15305479 15310218 +
Lapu Lapu9g01327 Chr9 27405908 27412977 +
Lasa Lasa5g03051 Chr5 529140173 529144653 -
Lele Lele01g0185 Chr01 1033782 1037418 +
Lele Lele02g0185 Chr02 1006770 1010462 +
Lele Lele03g0189 Chr03 1009531 1013125 +
Lele Lele04g0182 Chr04 1016299 1019995 +
Lja Lja1g4801 Chr1 65328822 65334128 +
Mepo Mepo3g06569 Chr3 79616551 79621885 -
Mesa Mesa9g04111 Chr9 73736934 73741646 -
Mibi Mibi05g0192 Chr05 1924764 1928238 +
Phco Phco7g00408 Chr7 2899360 2904739 -
Prci Prci15g0275 Chr15 1834219 1838778 +
Pste Pste2g00903 Chr2 9673000 9677422 -
Pumo Pumo10g01430 Chr10 19082723 19087980 -
Pvu Pvu9g0522 Chr9 9543518 9550136 +
Rops Rops10g02131 Chr10 38585923 38590807 -
Seca Seca4g02619 Chr4 44897624 44902985 -
Spst Spst9g00415 Chr9 3701909 3706366 -
Sto Sto9g2731 Chr9 29163250 29169313 +
Sto Sto5g1303 Chr5 8873587 8877694 -
Trre Trre5g03916 Chr5 40301765 40306185 -
Vian Vian4g01346 Chr4 27313128 27320370 +
Vifa Vifa2g02866 Chr2 813315995 813320383 -
Vimu Vimu10g02106 Chr10 30967099 30973550 +
Viun Viun9g02136 Chr9 31081629 31087185 +
Vivi Vivi3g02788 Chr3 46733688 46738732 +
Vvi Vvi16g1322 Chr16 21738991 21742793 -
Vvi Vvi16g1323 Chr16 21743485 21744182 +
Bva Bva12g01929 Chr12 15380396 15382158 +
Bva Bva06g02992 Chr06 18628030 18629910 -
Psa Psa6g0806 Chr6 28114281 28115822 -
Sto Sto5g1302 Chr5 8870062 8871156 -
Vvi Vvi16g1324 Chr16 21746473 21749300 +
Vvi Vvi16g1325 Chr16 21749338 21751201 +
Vvi Vvi16g1326 Chr16 21753606 21755553 +
Vvi Vvi16g1327 Chr16 21758099 21762464 +
Adu Adu08g00403 Chr08 7261645 7266322 +
Aev Aev08g0779 Chr08 4508925 4517445 +
Ahy Ahy17g2563 Chr17 121280945 121285664 +
Aip Aip07g02758 Chr07 112636347 112645017 +
Amo Amo17g2471 Chr17 122053043 122057265 +
Apr Apr1g0648 Chr1 7788823 7793654 +
Arst Arst8g00508 Chr8 7233835 7238386 +
Bach Bach12g00990 Chr12 7029780 7032471 -
Bva Bva12g01931 Chr12 15383883 15387528 +
Bva Bva06g02991 Chr06 18622694 18627259 -
Dod Dod08g2019 Chr08 47426814 47429664 +
Lapu Lapu9g01328 Chr9 27416211 27421815 +
Lasa Lasa5g03050 Chr5 528963500 528966195 -
Lja Lja1g4802 Chr1 65336743 65341228 +
Mepo Mepo3g06568 Chr3 79606675 79612121 -
Mesa Mesa9g04110 Chr9 73724673 73727375 -
Phac Phac9g01366 Chr9 10971645 10975071 +
Phco Phco7g01446 Chr7 13456104 13458799 -
Psa Psa5g1768 Chr5 137487344 137490041 +
Pste Pste2g03465 Chr2 35481875 35486446 -
Pumo Pumo10g01428 Chr10 19029427 19034138 -
Pvu Pvu9g0523 Chr9 9565834 9570350 +
Rops Rops10g02130 Chr10 38566657 38575240 -
Seca Seca4g02613 Chr4 44726193 44728847 -
Spst Spst9g01490 Chr9 15003236 15005936 -
Sto Sto5g1301 Chr5 8860781 8863487 -
Trre Trre5g03915 Chr5 40284066 40286774 -
Vian Vian4g01347 Chr4 27331631 27334331 +
Vifa Vifa2g02865 Chr2 813099278 813101979 -
Vimu Vimu10g02107 Chr10 30986639 30989617 +
Viun Viun9g02138 Chr9 31089451 31093080 +
Vivi Vivi3g02789 Chr3 46753256 46758117 +
Vvi Vvi16g1328 Chr16 21768761 21769192 +