Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1321 ATGGAAGGAGAGTGGCAGCAGCTGATTCAATCAGTGTTCTTCGGTCTGGTTTTCTCCTACCTTTTCGCGAAGCTCATATCGATTGTAATCTCCTTCCGAGACGAGAACCTCAGCTTGACCCGTGATTCCAAGCCCGAATCGCAGGGAGGAGCCGCCTCTGCCGATGACGACTCCGCGGGGTCTCAGAAATCTGGGGGTTCGGAAGGGGAGGAGTCGCTGCTGGCGGAGAAGGGGAGTGGGAGTAGTGGGAGTCTGTTGGATGACGATGATGATTGGGAGGGGGTGGAGAGTACTGAATTGGACGAGGAGTTCAGTGCTGCGACGGCTTTCGTGGCCGCCACGGCGGCGGATAGGCTGTCGCAGAAGGTGTCGAATGATGTGCAGTTGCAGCTTTATGGGCTTTACAAGATCGCGACCGAGGGACCGTGCAGTGCCCCGCAGCCATCAGCTTTGAAAATGACAGCTCGGGCTAAATGGCAAGCATGGCAGAAATTGGGTGCTATGCCTCCTGAAGAAGCAATGCAGAAGTACATTGCAATTGTTACAGAGCTATATCCTACTTGGGCAACTGGTTCAACTAATAAGAGTAAAGATGAGGGAGGTAGCAGTGCACCAAGTGGAGATGCTAAAGGACCAATGGGGCCGGTTTTCAGCACATTTGTCTATGAGGAGGAATGTGGAACTGAGCTGAAAATGGATGCTATACATGCGTTTGCCAGAGAAGGAGAGGTAGATAATCTGCTCAAATGTATTGATAACGGCGTTTCAGTGGATCTAAAGGATAGTGAGGGAAGAACCCCATTGCACTGGGCTGTAGATCGTGGCCACCTTAATCTCACTGAATTGCTTCTCAACCATGGTGCTGATGTGAATGCCAAGGACCATGAAGGCCAATCCCCATTGCATTACGCAGTCGTGTGTGAGAGAGAAGCTATTGCTGAGTTCCTTGTGAAGCAAAATGCAGACATCAACGCAATGGACAATGATGGTGCATCCCCTTTTGAACTGTGCGAATCAAACTGGCCTTGGATGCAAGGTGCAGCTAAACAGGCTTAG 1056 0.5104 MEGEWQQLIQSVFFGLVFSYLFAKLISIVISFRDENLSLTRDSKPESQGGAASADDDSAGSQKSGGSEGEESLLAEKGSGSSGSLLDDDDDWEGVESTELDEEFSAATAFVAATAADRLSQKVSNDVQLQLYGLYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIAIVTELYPTWATGSTNKSKDEGGSSAPSGDAKGPMGPVFSTFVYEEECGTELKMDAIHAFAREGEVDNLLKCIDNGVSVDLKDSEGRTPLHWAVDRGHLNLTELLLNHGADVNAKDHEGQSPLHYAVVCEREAIAEFLVKQNADINAMDNDGASPFELCESNWPWMQGAAKQA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1321 351 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 79 347 - -
Vvi16g1321 351 Gene3D - 223 341 IPR036770 -
Vvi16g1321 351 Gene3D - 94 206 IPR014352 -
Vvi16g1321 351 PRINTS Ankyrin repeat signature 264 279 IPR002110 GO:0005515
Vvi16g1321 351 PRINTS Ankyrin repeat signature 312 326 IPR002110 GO:0005515
Vvi16g1321 351 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515
Vvi16g1321 351 MobiDBLite consensus disorder prediction 54 68 - -
Vvi16g1321 351 SUPERFAMILY Ankyrin repeat 231 338 IPR036770 -
Vvi16g1321 351 SUPERFAMILY Acyl-CoA binding protein 99 189 IPR035984 GO:0000062
Vvi16g1321 351 ProSiteProfiles Ankyrin repeat profile. 296 328 IPR002110 GO:0005515
Vvi16g1321 351 MobiDBLite consensus disorder prediction 40 92 - -
Vvi16g1321 351 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 100 190 IPR000582 GO:0000062
Vvi16g1321 351 MobiDBLite consensus disorder prediction 192 211 - -
Vvi16g1321 351 ProSiteProfiles Ankyrin repeat region circular profile. 296 328 - -
Vvi16g1321 351 PRINTS Acyl-coA-binding protein signature 123 141 IPR000582 GO:0000062
Vvi16g1321 351 PRINTS Acyl-coA-binding protein signature 167 184 IPR000582 GO:0000062
Vvi16g1321 351 PRINTS Acyl-coA-binding protein signature 146 161 IPR000582 GO:0000062
Vvi16g1321 351 ProSiteProfiles Ankyrin repeat region circular profile. 263 294 - -
Vvi16g1321 351 SMART ANK_2a 230 259 IPR002110 GO:0005515
Vvi16g1321 351 SMART ANK_2a 263 292 IPR002110 GO:0005515
Vvi16g1321 351 SMART ANK_2a 296 325 IPR002110 GO:0005515
Vvi16g1321 351 Pfam Acyl CoA binding protein 101 181 IPR000582 GO:0000062
Vvi16g1321 351 Pfam Ankyrin repeats (many copies) 264 317 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1321 Vvi-Chr16 21734000 21737353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1321 3 345 Acyl Lipid Metabolism Gene Families AT5G53470 66.279 6.83e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1321 - - vvi:100262327 620.928