Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01929 ATGGCGAAGGCGGTGGTTTACGTGGTCATAGCCACTGCCTTTGTCCTCTTTATGACTCTATCACCTATTAGCCGGGAGCATCGCAAAGGCTCGGGCCTGAATCGGCGGTTTGGGTACAATATCCAGCAGAGAGCCCCAAGTTTTGATCCTCTCATCACCAAAATTGGAAGAACCGAAGAGGCTAACAAGAAAGTGGATCAACACGAACCTGAGGCTACCACAAACTTTTCACTCTACGGTCACGCTGCAGATGAATACCAATATTTCAGCTCTTCTGGCAAATTGAATACGACATTGAGGTTGATGATATTGTTCCCTTTGTTAGATAAAGAACCAAGGGATGGGGTCGTTAATTACAACGAGTTAGAAGCTTGGATAACTCAACAAGCTCTGGATAGATTGAATTATGTCACAAACACAGAATTAAAGGTGAAAGACAAGAATGGAGATAGGGCTATCTCTTTCACGGAGTATCTCCCTCAGTTTTCTGAACTGGATACGGagagaaaaggaatGGGGCACGGTGAAGCAGGATGGTGGCATGAGCGATTTACTAAAGCAGACATTGATCGCAACGGCCTTCTTAACTTCAGCGAGTTGAGAGATTTTTTGCACCCCGAAGACAGCGATAACCCAGAATTATTGAAATGGCTGTTGAGAGATAGAATCAAGTGCCTTGATGAGGAAGTTGATGGGAAACTGAAATTGAAGGAATTCAAGGAGCAATTATacaatatatacaaaactTACATAGAATTTGAAACTTCTGGACAGTTTGTACCTTCTGCAGAGGACAAGTTCTCTGATCTTGATGCAAACAAGGACGAATTCTTGTCTGTGGAAGAATTGATGCCGGTACTCCGTTATCTGTACCCAGGAGAACTATCTTATGCTAAGTATTACACGAGCTATCTATTCAATGAGGCTGATGATAATAAAGACTGGAACTTGTCGCTGCAAGAGATGTTGAATCATGAATTTGTGTTCTATAATACAGTTTATGCTGATGAGCATGAGGAGTTCGACCAAGATCATGATCATGATGAGCTTTG 1052 0.4163 MAKAVVYVVIATAFVLFMTLSPISREHRKGSGLNRRFGYNIQQRAPSFDPLITKIGRTEEANKKVDQHEPEATTNFSLYGHAADEYQYFSSSGKLNTTLRLMILFPLLDKEPRDGVVNYNELEAWITQQALDRLNYVTNTELKVKDKNGDRAISFTEYLPQFSELDTERKGMGHGEAGWWHERFTKADIDRNGLLNFSDFLHPEDSDNPELLKWLLRDRIKCLDEEVDGKLKLKEFKEQLYNIYKTYIEFETSGQFVPSAEDKFSDLDANKDEFLSVEELMPVLRYLYPGELSYAKYYTSYLFNEADDNKDWNLSLQEMLNHEFVFYNTVYADEHEEFDQDHDHDEL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01929 347 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Bva12g01929 347 Gene3D - 90 244 - -
Bva12g01929 347 SUPERFAMILY EF-hand 100 201 IPR011992 -
Bva12g01929 347 ProSiteProfiles EF-hand calcium-binding domain profile. 255 290 IPR002048 GO:0005509
Bva12g01929 347 SUPERFAMILY EF-hand 176 323 IPR011992 -
Bva12g01929 347 Pfam Secreted protein acidic and rich in cysteine Ca binding region 255 319 IPR019577 GO:0005509
Bva12g01929 347 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 347 - -
Bva12g01929 347 Gene3D - 245 324 - -
Bva12g01929 347 PANTHER RETICULOCALBIN 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01929 Bva-Chr12 15380396 15382158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01929 1 306 EF-hand Containing Proteins AT4G27790 43.260 5.03e-82 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01929 K23901 - gmx:100806007 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01929 12 15380396 15382158 Bva12g01929 12 15380396 15382158 ECH