Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1322 ATGTACGGTGCGTGGGGTCTACGCGCTTCCTCTGTCGTCCTCGGCATCCTTCTCGTCGGATGTTTGGTTGCGATCTCTATCGCAAAAGAGGAATCCAACAAATTGGGAACAGTTATTGGTATTGATCTTGGAACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGACATGTTGAGATCATAGCTAACGACCAAGGTAACCGTATCACCCCATCATGGGTTGCCTTCACTGACACTGAAAGGTTGATTGGTGAGGCTGCAAAGAATCAGGCGGCTGTCAATGCCGAGAGGACTGTATTTGATGTCAAGAGACTCATTGGAAGAAAATTTGATGATAAAGAGGTTCAAAAGGACATGAAGCTTTTCCCATTCAAGATCGTGAACAAGGATGGAAAGCCATATATACAAGTCAAGATTAAGGATGGGGAGACCAAGGTCTTCAGTCCTGAGGAGATAAGTGCTATGATTCTAACAAAGATGAAGGAGACAGCGGAAGCTTTCCTTGGAAAGACAATCAAGGATGCAGTTGTTACAGTTCCTGCTTACTTCAATGATGCCCAGAGGCAGGCCACCAAGGATGCAGGGATTATTGCTGGACTGAATGTTGCAAGAATCATCAATGAACCTACAGCAGCAGCCATTGCGTATGGTTTGGACAAAAAGGGTGGTGAAAAGAACATCCTTGTGTTTGATCTTGGTGGTGGTACATTTGATGTCAGTATCTTGACAATCGACAATGGTGTTTTTGAGGTTCTTGCCACTAATGGAGACACTCATCTGGGAGGTGAGGATTTTGATCAGAGAATCATGGAATACTTCATCAAATTGATCAAGAAGAAGCATGGAAAGGACATCAGCAAGGACAACAGAGCTATTGGGAAGTTGAGGAGAGAAAGTGAGCGTGCCAAGAGGGCCTTGAGTAGCCAGCATCAGGTCCGTGTGGAGATTGAATCTCTCTATGATGGTTTGGATTTCTCAGAACCACTTACCAGAGCTCGATTCGAAGAGTTGAACAATGACCTATTCAGAAAGACCATGGGACCTGTTAAGAAGGCCATGGAGGATGCAGGGTTGGAGAAGCGTCAGATTGATGAAATCGTTCTTGTTGGTGGAAGCACCAGGATTCCTAAAGTTCAACAGCTTCTAAAGGAGTATTTTGATGGAAAAGAACCCAACAAGGGTGTGAACCCGGATGAAGCCGTTGCTTATGGTGCTGCTGTACAAGGAAGCATCTTGAGTGGAGAGGGTGGTGATGAAACCAAAGATATCCTTCTCTTGGATGTGGCTCCACTCACTCTTGGTATTGAAACGGTTGGCGGGGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAAGAAATCTCAAGTTTTCACTACCTATCAGGATCAGCAGACAACGGTGTCCATTCAGGTCTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTAAATGTAAAGGCTGAAGACAAAGCTTCAGGGAAATCTGAGAAAATCACAATCACCAATGACAAGGGTCGCCTGAGTCAAGAGGAGATTGACCGGATGGTGAGGGAAGCAGAGGAATTTGCAGAGGAAGACAAGAAGATCAAGGAGAAGATTGATGCCAGAAACAGCTTGGAGAGCTATGTCTACAACATGAAGACCCAGATCAATGACAAGGACAAACTGGCAGACAAATTAGAATCGGAGGAGAAGGAGAAGATTGAGACAGCAGTGAAAGAGGCCCTCGAGTGGCTGGACGACAACCAGAATGCAGAGACAGAGGACTACCAGGAGAAGCTGAAAGAGGTGGAAGCAGTGTGTAACCCCATCATCACTGCTGTTTATCAGAGGTCTGGTGGTGCCCCTGGTGGGAGTTCAGATGCAGGGGAAGATGAAGACTCCCATGATGAGCTGTAG 2004 0.4591 MYGAWGLRASSVVLGILLVGCLVAISIAKEESNKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAVNAERTVFDVKRLIGRKFDDKEVQKDMKLFPFKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKTIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRAIGKLRRESERAKRALSSQHQVRVEIESLYDGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKEYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRELGKFDLSGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKIKEKIDARNSLESYVYNMKTQINDKDKLADKLESEEKEKIETAVKEALEWLDDNQNAETEDYQEKLKEVEAVCNPIITAVYQRSGGAPGGSSDAGEDEDSHDEL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1322 667 FunFam Heat shock 70 kDa 417 571 - -
Vvi16g1322 667 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Vvi16g1322 667 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
Vvi16g1322 667 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 652 IPR029048 -
Vvi16g1322 667 PANTHER HEAT SHOCK PROTEIN 70KDA 38 609 IPR013126 GO:0005524|GO:0140662
Vvi16g1322 667 FunFam Heat shock protein 70 39 226 - -
Vvi16g1322 667 MobiDBLite consensus disorder prediction 644 667 - -
Vvi16g1322 667 Coils Coil 547 567 - -
Vvi16g1322 667 Gene3D Actin; Chain A, domain 4 261 344 - -
Vvi16g1322 667 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 571 IPR029047 -
Vvi16g1322 667 Coils Coil 603 623 - -
Vvi16g1322 667 Pfam Hsp70 protein 38 645 IPR013126 GO:0005524|GO:0140662
Vvi16g1322 667 FunFam Chaperone protein HscA homolog 227 275 - -
Vvi16g1322 667 FunFam Luminal-binding protein 5 571 646 - -
Vvi16g1322 667 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 575 IPR029047 -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 363 379 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 175 195 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 395 415 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 87 95 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 503 519 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 422 441 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 37 50 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 65 77 - -
Vvi16g1322 667 PRINTS 70kDa heat shock protein signature 235 245 - -
Vvi16g1322 667 Gene3D - 39 410 - -
Vvi16g1322 667 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Vvi16g1322 667 Coils Coil 581 601 - -
Vvi16g1322 667 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Vvi16g1322 667 FunFam Endoplasmic reticulum chaperone BiP 261 344 - -
Vvi16g1322 667 Gene3D - 572 646 IPR029048 -
Vvi16g1322 667 CDD HSPA5-like_NBD 36 410 IPR042050 -
Vvi16g1322 667 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Vvi16g1322 667 Gene3D - 221 395 - -
Vvi16g1322 667 FunFam heat shock 70 kDa protein-like 100 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1322 Vvi-Chr16 21738991 21742793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1322 18 667 Miscellaneous Gene Families AT5G42020 90.031 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1322 K09490 - vvi:100253826 1274.23