Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02992 ATGGCTAAGGCGGTGGTTTACGTGCTCCTAACCACCGCCTTTGTCCTGTTGATGACTCTATCGCCTCTTATCCGGGACCAACGCAGAGGCCCCTCCCTGAATCGCCGGTTTGGCTACGACATCCAGCAGAGAGTCCCAAGTTTTGATCCCCTTATCACCAAAATTGAGAGATCCAAAGAGGAGCACAAGCAAGTGGTGCACGATGGTGATCGGCATGAACCTGAACCCGAGCCCGAACCTACCGCAAACACTTCACTTTACAGTGATTCTGCAGACGCGTACCAATCTATGACCACTGCTGGCAGATTAAATACAACATTGAGGTTGATGATTTTGTTCCCTTTGCTGGATAAAGAACCAAAGGATGGGGTTATTGATTACAATGAATTAGAGACTTGGATAATTCAACAAGCTATGGACAGATTGGATTATATGACAAACACAGAATTACAGGAGAAAGACAAGAATGGAGATAGGGCTATCTCTTTTAGGGAATATCTCCCTCAATTTTCTGAGAAGGATATAGAGAGAAAATCAATGGGGCACGGGGAAGCAGGATGGTGGCTCGAGCGATTTAACAAAGCAGACGGTGATGGCAACGGCCTTCTTCACTTCAGCGAGTTTAGAGATTTCTTGCATCCACAAGacagcaaaaatgaaaaattgttgaaatggCTCTTGACAGATAGAATCAGGCGCATTGACGAAGAAATTGACGGTAAACTGAATTTCAAGGAATTCAATGAGAAAGTTTACAACATGTTCAAAACTTACGCAGAATATGAAACTGCTGGACAGTTTGTACCTTCTGCAGAGAAGAAGTTTTCTGAGCTTGATGCAAACAACGACGAATTCCTGTCAGTGGAAGAATTGATGGGGATACTTCGCTACCTCTACCCAGGAGAGCTATCTTATGCTAAATATTACACAAGCTATCTAATGAATGTGGCTGATGATGATAGAGATGGGAGATTGTCACTGGAAGAGATGCTGAACCATGAATTTGCGTTCTACAGCACGGTTCATGCTGATGAGCATGAGGAGTCAGACGATGATCACGATGAACTCTG 1070 0.4327 MAKAVVYVLLTTAFVLLMTLSPLIRDQRRGPSLNRRFGYDIQQRVPSFDPLITKIERSKEEHKQVVHDGDRHEPEPEPEPTANTSLYSDSADAYQSMTTAGRLNTTLRLMILFPLLDKEPKDGVIDYNELETWIIQQAMDRLDYMTNTELQEKDKNGDRAISFREYLPQFSEKDIERKSMGHGEAGWWLERFNKADGDGNGLLHFSEFRDFLHPQDSKNEKLLKWLLTDRIRRIDEEIDGKLNFKEFNEKVYNMFKTYAEYETAGQFVPSAEKKFSELDANNDEFLSVEELMGILRYLYPGELSYAKYYTSYLMNVADDDRDGRLSLEEMLNHEFAFYSTVHADEHEESDDDHDEL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02992 356 SMART efh_1 187 215 IPR002048 GO:0005509
Bva06g02992 356 SMART efh_1 270 298 IPR002048 GO:0005509
Bva06g02992 356 SMART efh_1 309 337 IPR002048 GO:0005509
Bva06g02992 356 SMART efh_1 226 254 IPR002048 GO:0005509
Bva06g02992 356 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Bva06g02992 356 ProSitePatterns EF-hand calcium-binding domain. 318 330 IPR018247 -
Bva06g02992 356 Gene3D - 47 180 - -
Bva06g02992 356 Gene3D - 250 335 - -
Bva06g02992 356 ProSiteProfiles EF-hand calcium-binding domain profile. 266 301 IPR002048 GO:0005509
Bva06g02992 356 SUPERFAMILY EF-hand 108 168 IPR011992 -
Bva06g02992 356 MobiDBLite consensus disorder prediction 59 88 - -
Bva06g02992 356 Gene3D - 190 249 - -
Bva06g02992 356 Pfam EF-hand domain pair 272 332 IPR002048 GO:0005509
Bva06g02992 356 PANTHER RETICULOCALBIN 1 356 - -
Bva06g02992 356 MobiDBLite consensus disorder prediction 59 78 - -
Bva06g02992 356 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 356 - -
Bva06g02992 356 SUPERFAMILY EF-hand 184 339 IPR011992 -
Bva06g02992 356 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02992 Bva-Chr6 18628030 18629910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02992 1 315 EF-hand Containing Proteins AT4G27790 41.195 2.43e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02992 K23901 - gmx:100806007 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02992 06 18628030 18629910 Bva06g02992 06 18628030 18629910 ECH