Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01346 ATGGCCGAGTGGCACTCTCTCCTCCAATCGATTATTGTCGGCCTCATTTTCTCTTACCTTCTCGCCAAGCTCATCTCCATCGTCGTTTCATTCAAAGATGACAACCTCACCGTCACGCGCGCTGCCACTGCCACCGCCGCCGTCGAGCCCGTGGAATCCGAGGCTGTTAAACGCGAAGACGTCGTTCCAGATTCCGCGGCCTCGCTCAGGTTAGAGGAGCAGTCCGTGGTGGCCGAGCACGGTAGCGTGAGGAATGATAGTGACGGCGACTACGACGATGATGATTGGGAAGGTGTGGAGAGCACCGAATTGGACGAGGCATTCAGCGCAGCGACGGCGTTCGTGGCCGCCGCTGCCGCTGATCGGCTCTCGCAGAAGGTGTCGAGCGACTTGCAGCTCCAGCTTTACGGGTTGTACAAGATTGCCACTGAAGGTCCCTGCAGCACGCCCCAACCTTCGCCCCTCAAAATGACCGCACGTGCTAAATGGCAAGCATGGCAGAAATTGGGCGCGATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAACTGTATCCTGCTTGGCTTGATGGTTCATCTTTGAAGAGTAGAAGTGGCGATGGTGCTGGCTCTGGTTCAGAGGCTAAGGGACCAATGGGGCCAGTTTTCAGTACTTTTGTTTATGAAGAAGAATATGGCAGCGACTCGCAAATGGAAGCCATTCATGGATTTGCCAGGGAAGGAGATATGGCTAATCTGCTCAAGTGTATTGAAAATGGTGTTTCAGTTAATTTGAAAGACAGTGAGGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGTTGCTTCTGAGCAAGAATGCTGATGTGAATGCCAAGGATAATGATGGACAAACTGCCTTGCATTACGCTGTTACGTGTGAGAGAGAAGGCATAGCTGAGTATTTAGTGAAGCATAATGCAGACATAAATTCAAAAGATAATGATGGGAATTCACCGCGAGACATCTGTGAGCCAAGCTGGCCATGTTTGCAGCACGTGGAGGAAGTAAACTGA 1065 0.5155 MAEWHSLLQSIIVGLIFSYLLAKLISIVVSFKDDNLTVTRAATATAAVEPVESEAVKREDVVPDSAASLRLEEQSVVAEHGSVRNDSDGDYDDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSSDLQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPAWLDGSSLKSRSGDGAGSGSEAKGPMGPVFSTFVYEEEYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLLSKNADVNAKDNDGQTALHYAVTCEREGIAEYLVKHNADINSKDNDGNSPRDICEPSWPCLQHVEEVN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01346 354 Gene3D - 98 208 IPR014352 -
Vian4g01346 354 ProSiteProfiles Ankyrin repeat region circular profile. 299 331 - -
Vian4g01346 354 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 104 194 IPR000582 GO:0000062
Vian4g01346 354 PRINTS Ankyrin repeat signature 267 282 IPR002110 GO:0005515
Vian4g01346 354 PRINTS Ankyrin repeat signature 315 329 IPR002110 GO:0005515
Vian4g01346 354 Pfam Acyl CoA binding protein 105 185 IPR000582 GO:0000062
Vian4g01346 354 ProSiteProfiles Ankyrin repeat region circular profile. 266 298 - -
Vian4g01346 354 SMART ANK_2a 233 262 IPR002110 GO:0005515
Vian4g01346 354 SMART ANK_2a 299 328 IPR002110 GO:0005515
Vian4g01346 354 SMART ANK_2a 266 295 IPR002110 GO:0005515
Vian4g01346 354 ProSiteProfiles Ankyrin repeat profile. 299 331 IPR002110 GO:0005515
Vian4g01346 354 PRINTS Acyl-coA-binding protein signature 127 145 IPR000582 GO:0000062
Vian4g01346 354 PRINTS Acyl-coA-binding protein signature 171 188 IPR000582 GO:0000062
Vian4g01346 354 PRINTS Acyl-coA-binding protein signature 150 165 IPR000582 GO:0000062
Vian4g01346 354 SUPERFAMILY Ankyrin repeat 232 340 IPR036770 -
Vian4g01346 354 Pfam Ankyrin repeats (3 copies) 239 330 IPR002110 GO:0005515
Vian4g01346 354 ProSiteProfiles Ankyrin repeat profile. 266 298 IPR002110 GO:0005515
Vian4g01346 354 Gene3D - 225 343 IPR036770 -
Vian4g01346 354 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 82 342 - -
Vian4g01346 354 SUPERFAMILY Acyl-CoA binding protein 103 193 IPR035984 GO:0000062
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01346 Vian-Chr4 27313128 27320370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01346 1 354 Acyl Lipid Metabolism Gene Families AT5G53470 64.507 1.76e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01346 - - gmx:100816670 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01346 4 27313128 27320370 Vian4g01346 4 27313128 27320370 ECH