Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3559 ATGGCTGAGTGGCAGCCCCTCCTCCAATCCATCTTCGTCGGCCTCATTGTCTCTTTCCTCATCGCCAAGCTCATCTCCTCCGTCCTCGCCACCAAGCACGACACTCGCGCCTCCCCTCCCGAACCTCACACAACCGGTGCCGTTCCTGGACCTGGGCTTGGGACCACTTTCACAAGGTCCGATGCTGACGAGACCGAGTCCGTATCGGCTGAGCAGGGGAGCCCGACTCACAGTGGAGTGGGCAGCGACAGTGACGACGACGACGATTGGGAAGGCGTGGAGAGCACGGAACTCGATGAGGCGTTCAGTGCTGCGACCGCGTTTGTTGCGGCCGCGGCGGCGGATCAGCGATCTCAGAAGGTGTCGACGGATGTGCAGCTGCAGCTCTATGGGCTTTACAAGATTGCCACCGAAGGTCCCTGTAGTGTGCCGCAACCCTCAGCGCTGAAAATGACGGCTCGAGCGAAATGGCAAGCATGGCAAAAATTGGGTGCTATGACTCCTGAAGATGCRATGCAGAAGTACATTGATATTGTTACAGAGCTATATCCCTCATGGCTTGATGGAGCTTCACTTTCGAGGGACAAAGGCAGTGATGGTGACAGTGGCGGCTCTGGTTCAGAGTCTAAGGGACCAATGGGACCAGTATTCAGCAGCTTCGTGTTTGAAGAGGACTCTGGTAGTGACTTGAAAATGGACGCCATTCATGGATTTGCCAGAGAAGGGGATGCGGTTAATCTACTCAAGTGTGTTGAAAATGGTGTTTCAGTGAATGTCAAGGACAGTGAAGGTCGGACACCATTACACTGGGCCGTGGATCGTGGCCACCTTAATGTCACAGAGCTACTTATTAGCAGGAATGCTGATATTAATGCCAAGGATAATGATGGACAAACACCACTGCATTACGCCGTTGTCTGTGAGCGGGAAGCAATAGCTGAGTATTTAGTGAAGCATAATGCAGACACAAACTTGAAAGACAACGATGGCAGTTCCTCACGTGACATATGTGAGTTTAACTGGCCTTGTATGCAGCGCATCTCGGAAGCAAATTGA 1056 0.5275 MAEWQPLLQSIFVGLIVSFLIAKLISSVLATKHDTRASPPEPHTTGAVPGPGLGTTFTRSDADETESVSAEQGSPTHSGVGSDSDDDDDWEGVESTELDEAFSAATAFVAAAAADQRSQKVSTDVQLQLYGLYKIATEGPCSVPQPSALKMTARAKWQAWQKLGAMTPEDAMQKYIDIVTELYPSWLDGASLSRDKGSDGDSGGSGSESKGPMGPVFSSFVFEEDSGSDLKMDAIHGFAREGDAVNLLKCVENGVSVNVKDSEGRTPLHWAVDRGHLNVTELLISRNADINAKDNDGQTPLHYAVVCEREAIAEYLVKHNADTNLKDNDGSSSRDICEFNWPCMQRISEAN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3559 351 MobiDBLite consensus disorder prediction 193 214 - -
Amo16g3559 351 PRINTS Acyl-coA-binding protein signature 121 139 IPR000582 GO:0000062
Amo16g3559 351 PRINTS Acyl-coA-binding protein signature 144 159 IPR000582 GO:0000062
Amo16g3559 351 PRINTS Acyl-coA-binding protein signature 165 182 IPR000582 GO:0000062
Amo16g3559 351 SMART ANK_2a 263 292 IPR002110 GO:0005515
Amo16g3559 351 SMART ANK_2a 296 325 IPR002110 GO:0005515
Amo16g3559 351 MobiDBLite consensus disorder prediction 58 80 - -
Amo16g3559 351 ProSiteProfiles Ankyrin repeat region circular profile. 296 328 - -
Amo16g3559 351 Gene3D - 92 204 IPR014352 -
Amo16g3559 351 Pfam Acyl CoA binding protein 99 179 IPR000582 GO:0000062
Amo16g3559 351 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 98 188 IPR000582 GO:0000062
Amo16g3559 351 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 345 - -
Amo16g3559 351 MobiDBLite consensus disorder prediction 34 91 - -
Amo16g3559 351 Gene3D - 301 340 IPR036770 -
Amo16g3559 351 ProSiteProfiles Ankyrin repeat region circular profile. 263 295 - -
Amo16g3559 351 Pfam Ankyrin repeats (3 copies) 236 327 IPR002110 GO:0005515
Amo16g3559 351 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515
Amo16g3559 351 ProSiteProfiles Ankyrin repeat profile. 296 328 IPR002110 GO:0005515
Amo16g3559 351 SUPERFAMILY Ankyrin repeat 231 337 IPR036770 -
Amo16g3559 351 SUPERFAMILY Acyl-CoA binding protein 97 187 IPR035984 GO:0000062
Amo16g3559 351 Gene3D - 227 300 IPR036770 -
Amo16g3559 351 PRINTS Ankyrin repeat signature 264 279 IPR002110 GO:0005515
Amo16g3559 351 PRINTS Ankyrin repeat signature 312 326 IPR002110 GO:0005515
Amo16g3559 351 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3559 Amo-Chr16 145689336 145693490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3559 1 351 Acyl Lipid Metabolism Gene Families AT5G53470 61.538 1.01e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3559 - - aip:107605229 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3559 16 145689336 145693490 Amo16g3559 16 145689336 145693490 ECH