Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4801 ATGGCTGAATGGCAATCGCTCTTGCAATCCATTATCGTCGGTCTCATTTTCTCTTACCTTCTCGCGAAGCTAATCTCCATCGTGGTTTCATTCAAGGAGGATAATCTCACCATCACACGGGCTGCGGCGGAGCCTGATGACGCCGCCGCCGCCAAGCAACACGACGACGCCGTTTCAGCTTCCGATGCCGCCGCGGCGCAACGCTCTGAGCTTGAGTCGGTGATGGCTGAGCAGGGTAGCGTGAGGAATGAGAGCCTTGATGGCGGTGACGATGATTACGAGGATGATTGGGAAGGGGTGGAGAGTACGGAATTGGATGAGGCGTTTAGTGCTGCTACGGCGTTTGTTGCTGCTGCCGCCGCTGATCGGCTCTCGCAGAAGGTTTCTAATGATGTGCAGCTGCAGCTTTATGGGTTGTATAAGATTGCCACGGAGGGTCCCTGTAGCACGCCGCAGCCTTCGCCTATCAAACTCACCGCTCGAGCTAAATGGCAAGCGTGGCAGAAATTGGGTGCTATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAACTATATCCTACTTGGCTTGATGGTTCTTCTTTGAGGAGCAAAACTAGTGATGGTGATGGGCATAGTTCAGATGCTAAGGGACCAATGGGGCCAGTGTTCAGCTCTTTCGTTTATGAAGAGGAATGTGGCAGTGACTCTAAAATGGATGCCATTCATGGATTTGCTAGGGAAGGAGATATGGCTAATCTGCTCAAGTGCATCGAAGATGGTGTTTCAGTGAATGTGAAAGACAGTGAGGGCCGGACACCATTGCACTGGGCTGTGGATCGGGGCCACCTTGATGTCACCGAGCTGCTTCTTGGCAGGAACGCTGATGTAAATGCCAAGGATAATGATGGACAAGCTCCACTGCACTATGCTGTTACATGTGAGAGAGAAGCCATAGCTGAGTATTTAGTGAAGCATAAAGCAGATACAGATTTAAAGGATAATGATGGGAGTTCCCCGCGTGACATCTGTACGTCAAACTGGCCGTGCATGCAGCAGGTGGGGGAAGTATATTGA 1068 0.5094 MAEWQSLLQSIIVGLIFSYLLAKLISIVVSFKEDNLTITRAAAEPDDAAAAKQHDDAVSASDAAAAQRSELESVMAEQGSVRNESLDGGDDDYEDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTPQPSPIKLTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWLDGSSLRSKTSDGDGHSSDAKGPMGPVFSSFVYEEECGSDSKMDAIHGFAREGDMANLLKCIEDGVSVNVKDSEGRTPLHWAVDRGHLDVTELLLGRNADVNAKDNDGQAPLHYAVTCEREAIAEYLVKHKADTDLKDNDGSSPRDICTSNWPCMQQVGEVY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4801 355 MobiDBLite consensus disorder prediction 73 97 - -
Lja1g4801 355 SMART ANK_2a 234 263 IPR002110 GO:0005515
Lja1g4801 355 SMART ANK_2a 267 296 IPR002110 GO:0005515
Lja1g4801 355 SMART ANK_2a 300 329 IPR002110 GO:0005515
Lja1g4801 355 Pfam Ankyrin repeats (many copies) 257 308 IPR002110 GO:0005515
Lja1g4801 355 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 350 - -
Lja1g4801 355 SUPERFAMILY Ankyrin repeat 233 344 IPR036770 -
Lja1g4801 355 PRINTS Acyl-coA-binding protein signature 128 146 IPR000582 GO:0000062
Lja1g4801 355 PRINTS Acyl-coA-binding protein signature 172 189 IPR000582 GO:0000062
Lja1g4801 355 PRINTS Acyl-coA-binding protein signature 151 166 IPR000582 GO:0000062
Lja1g4801 355 Pfam Acyl CoA binding protein 106 186 IPR000582 GO:0000062
Lja1g4801 355 Gene3D - 226 345 IPR036770 -
Lja1g4801 355 SUPERFAMILY Acyl-CoA binding protein 104 194 IPR035984 GO:0000062
Lja1g4801 355 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 350 - -
Lja1g4801 355 Gene3D - 99 210 IPR014352 -
Lja1g4801 355 ProSiteProfiles Ankyrin repeat profile. 267 299 IPR002110 GO:0005515
Lja1g4801 355 PRINTS Ankyrin repeat signature 316 330 IPR002110 GO:0005515
Lja1g4801 355 PRINTS Ankyrin repeat signature 268 283 IPR002110 GO:0005515
Lja1g4801 355 ProSiteProfiles Ankyrin repeat profile. 300 332 IPR002110 GO:0005515
Lja1g4801 355 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 105 195 IPR000582 GO:0000062
Lja1g4801 355 ProSiteProfiles Ankyrin repeat region circular profile. 267 299 - -
Lja1g4801 355 ProSiteProfiles Ankyrin repeat region circular profile. 300 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4801 Lja-Chr1 65328822 65334128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4801 1 350 Acyl Lipid Metabolism Gene Families AT5G53470 63.143 4.35e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4801 - - gmx:100816670 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4801 1 65328822 65334128 Lja1g4801 1 65328822 65334128 ECH