Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1309 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1310 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g03001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2723 . . . . . . . . . . . . . . . . . . .
Vvi16g1311 . . . . . . . . Aev08g0774 . Ahy17g2557 . Aip07g02745 . . . Amo17g2457 . Apr1g0644 . . . . . . . Bva12g01922 Bva06g02999 . . . . . . . . . . . . . . . . . . . . Lal17g0583 Lal4g0508 Lal21g0577 . . . Lan15g0661 Lan15g0661 Lan15g0661 . . . . . . . . . . . . . . . Lja1g4791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2724 Sto5g1309 . . . . . . . . . . . . . . . . . .
Vvi16g1312 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g02998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1308 . . . . . . . . . . . . . . . . . .
Vvi16g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1314 . . . . . . . . . Aev07g1600 . Ahy16g2781 . Aip06g03131 . . . Amo16g3544 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1315 . . . . . . . . . . . Ahy16g2936 . Aip06g03139 . . . Amo16g3552 . . . . . . . . Bva12g01923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2726 . . . . . . . . . . . . . . . . . . .
Vvi16g1316 . . . . . . . . Aev08g0776 . Ahy17g2558 Ahy16g2937 Aip07g02747 Aip06g03140 . . . . Apr1g0645 . . . . . . . Bva12g01924 Bva06g02997 . . . . . . . . . . . . . . . . . . . . Lal17g0582 Lal4g0507 . . . . Lan15g0663 Lan15g0663 . . . . . . . . . . . . . . . . Lja1g4795 . . . . . . . . . . . . . . . . . Psa5g1763 Psa6g0825 . . . . . . . . . . . . . . . . . . Sto9g2728 Sto5g1307 . . . . . . . . . . . . . . . . . .
Vvi16g1317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1318 . . . . Adu08g00401 . . . Aev08g0778 . Ahy17g2560 . Aip07g02754 . . . Amo17g2468 . Apr1g0646 . Arst8g00500 . Bach12g00994 . . . Bva12g01926 Bva06g02995 . . . . . . . . . . . . . . . . . . . . Lal17g0581 . . . . . Lan15g0664 . . . . . Lapu9g01326 . Lasa5g03052 . . . . . . . . . Lja1g4800 . . . Mepo3g06570 . Mesa9g04112 . . . . . Phac9g01363 . Phco7g01450 . . . Psa5g1765 . Pste2g03468 . . . . . Pumo10g01431 . Pvu9g0521 . Rops10g02132 . Seca4g02620 . Spst9g01492 . . . . Sto5g1306 . . Trre5g03920 . . . Vian4g01343 . Vifa2g02871 . Vimu10g02105 . Viun9g02134 . Vivi3g02787 . . .
   
Previous Page 2341 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1309 Chr16 21625276 21629130 +
Vvi Vvi16g1310 Chr16 21629331 21631904 -
Bva Bva06g03001 Chr06 18674572 18677525 +
Sto Sto9g2723 Chr9 29112706 29115273 -
Vvi Vvi16g1311 Chr16 21636455 21637866 -
Aev Aev08g0774 Chr08 4466560 4468987 -
Ahy Ahy17g2557 Chr17 121019387 121020802 -
Aip Aip07g02745 Chr07 112393968 112395421 -
Amo Amo17g2457 Chr17 121810004 121811431 -
Apr Apr1g0644 Chr1 7727150 7728741 -
Bva Bva12g01922 Chr12 15335757 15337921 -
Bva Bva06g02999 Chr06 18670090 18672292 +
Lal Lal17g0583 Chr17 4163760 4166730 +
Lal Lal4g0508 Chr4 3683890 3685172 +
Lal Lal21g0577 Chr21 4294142 4296451 +
Lan Lan15g0661 Chr15 15192324 15194221 -
Lan Lan15g0661 Chr15 15192324 15194221 -
Lan Lan15g0661 Chr15 15192324 15194221 -
Lja Lja1g4791 Chr1 64879554 64881573 -
Sto Sto9g2724 Chr9 29119861 29121447 -
Sto Sto5g1309 Chr5 8937010 8938749 +
Vvi Vvi16g1312 Chr16 21644057 21649749 -
Bva Bva06g02998 Chr06 18661072 18666059 +
Sto Sto5g1308 Chr5 8923858 8930626 +
Vvi Vvi16g1313 Chr16 21655663 21657142 -
Vvi Vvi16g1314 Chr16 21674968 21676537 -
Aev Aev07g1600 Chr07 16365164 16366642 -
Ahy Ahy16g2781 Chr16 140927284 140933506 +
Aip Aip06g03131 Chr06 126802524 126808629 +
Amo Amo16g3544 Chr16 145438659 145444797 +
Psa Psa6g0828 Chr6 29106984 29112280 -
Vvi Vvi16g1315 Chr16 21677420 21681683 +
Ahy Ahy16g2936 Chr16 143896099 143900579 +
Aip Aip06g03139 Chr06 126926731 126931099 +
Amo Amo16g3552 Chr16 145573863 145578256 +
Bva Bva12g01923 Chr12 15346426 15349555 +
Sto Sto9g2726 Chr9 29129766 29132103 +
Vvi Vvi16g1316 Chr16 21691632 21695112 +
Aev Aev08g0776 Chr08 4493344 4495990 +
Ahy Ahy17g2558 Chr17 121157028 121161745 +
Ahy Ahy16g2937 Chr16 143923753 143928773 +
Aip Aip07g02747 Chr07 112527450 112532140 +
Aip Aip06g03140 Chr06 126969245 126974264 +
Apr Apr1g0645 Chr1 7755717 7761037 +
Bva Bva12g01924 Chr12 15358658 15363669 +
Bva Bva06g02997 Chr06 18645777 18650978 -
Lal Lal17g0582 Chr17 4138366 4143175 -
Lal Lal4g0507 Chr4 3647965 3652840 -
Lan Lan15g0663 Chr15 15258494 15263313 +
Lan Lan15g0663 Chr15 15258494 15263313 +
Lja Lja1g4795 Chr1 65085704 65089143 +
Psa Psa5g1763 Chr5 137074592 137077382 +
Psa Psa6g0825 Chr6 28994406 28999781 +
Sto Sto9g2728 Chr9 29145159 29148651 +
Sto Sto5g1307 Chr5 8896364 8899599 -
Vvi Vvi16g1317 Chr16 21707693 21707992 +
Vvi Vvi16g1318 Chr16 21708658 21712089 +
Adu Adu08g00401 Chr08 7207649 7208945 +
Aev Aev08g0778 Chr08 4502266 4504302 +
Ahy Ahy17g2560 Chr17 121216172 121217497 +
Aip Aip07g02754 Chr07 112579554 112580980 +
Amo Amo17g2468 Chr17 122011424 122011955 +
Apr Apr1g0646 Chr1 7770613 7773709 +
Arst Arst8g00500 Chr8 7179810 7181044 +
Bach Bach12g00994 Chr12 7047764 7050128 -
Bva Bva12g01926 Chr12 15368215 15370327 +
Bva Bva06g02995 Chr06 18639496 18642659 -
Lal Lal17g0581 Chr17 4132923 4136011 -
Lan Lan15g0664 Chr15 15294522 15297663 +
Lapu Lapu9g01326 Chr9 27397641 27400541 +
Lasa Lasa5g03052 Chr5 529172806 529175705 -
Lja Lja1g4800 Chr1 65320857 65324552 +
Mepo Mepo3g06570 Chr3 79625441 79628820 -
Mesa Mesa9g04112 Chr9 73745293 73751552 -
Phac Phac9g01363 Chr9 10949072 10951595 +
Phco Phco7g01450 Chr7 13483305 13485980 -
Psa Psa5g1765 Chr5 137307515 137310309 +
Pste Pste2g03468 Chr2 35521815 35524991 -
Pumo Pumo10g01431 Chr10 19095958 19098742 -
Pvu Pvu9g0521 Chr9 9534139 9536699 +
Rops Rops10g02132 Chr10 38595565 38598676 -
Seca Seca4g02620 Chr4 44921736 44924226 -
Spst Spst9g01492 Chr9 15029550 15032943 -
Sto Sto5g1306 Chr5 8885896 8890915 -
Trre Trre5g03920 Chr5 40309259 40311335 -
Vian Vian4g01343 Chr4 27277537 27279303 +
Vifa Vifa2g02871 Chr2 813468595 813470592 -
Vimu Vimu10g02105 Chr10 30933281 30934943 +
Viun Viun9g02134 Chr9 31071877 31073744 +
Vivi Vivi3g02787 Chr3 46726515 46728810 +