Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0647 ATGGCCGAGTGGCAGTCCCTCTTGCAATCCATTTTCCTTGGTGTCATTTTCTCTTACCTTGTTGCCAAGCTCATCTCCATCGTCGTTTCGTTCAAAGACGACAACCTCACCATCACTCGCACAGCCACTGCAGAACCCGATGATGCCAAACACGACGACGCCGTTTCCGATGCCACGCGTCCCTTCGAGGCCGAGTCGGTCATGGCTGAGCAAGGTAGCGTCAGGAACGAAAGCGTGGACGGTGGCGACGACGACGACGACGACGACTGGGAAGGAGTGGAAACCACCGAATTAGACGAAGCGTTCAGCGCCGCCACCGCTTTCGTCGCCGCCGCCGCCGCCGATCGCCTCTCGCAGAAGGTGTCCAGTGACGTGCAGCTCCAGCTTTATGGCTTGTACAAGATTGCCACCGAAGGTCCTTGTAGCACGCCACAACCTTCGCCGCTCAAAATGACCGCTAGAGCCAAGTGGCAAGCGTGGCAAAAATTGGGTGCTATGCCTCCTGAAGATGCAATGCAGAAATACATTGACATTGTGACAGAGTTATATCCTACTTGGCTTGATGGTTCATCTTTGGTGATGTTTCTTCAACAGAGGAATAAAAGTGGTGAAGGTGGTGGTCCTAGTTCAGAGGCTAGAGGAGCAATGGGACCAGTATTCAGCACTTTCGTTTATGAAGAGGAATATGGCAGTGACTCGCAAATGGAAGCCATTCATGGATTTGCCAGAGAAGGAGATATGGCCAATCTGCTTAAGTGTATTGAAAATGGTGTTTCAGTGAATTTGAAGGACAGTGAGGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGTTGCTTGTTGGCAAGAATGCTGATGTAAATGCAAAGGATAATGACGGACAAACTCCATTGCATTATGCTGCTACTTGTGAGAGAGAAGCCATAGCTGAGTATTTAGTGAAGCATAATGCAGACATACATTCAAAGGATAATGATGGGAGTTCCCCGCGTGACATCTGTGAGTCAAACTGGCCGTGTTTGCAGCATGTTGGGGAAGTAAATTGA 1065 0.5023 MAEWQSLLQSIFLGVIFSYLVAKLISIVVSFKDDNLTITRTATAEPDDAKHDDAVSDATRPFEAESVMAEQGSVRNESVDGGDDDDDDDWEGVETTELDEAFSAATAFVAAAAADRLSQKVSSDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWLDGSSLVMFLQQRNKSGEGGGPSSEARGAMGPVFSTFVYEEEYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGKNADVNAKDNDGQTPLHYAATCEREAIAEYLVKHNADIHSKDNDGSSPRDICESNWPCLQHVGEVN* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0647 354 Gene3D - 92 193 IPR014352 -
Apr1g0647 354 SMART ANK_2a 233 262 IPR002110 GO:0005515
Apr1g0647 354 SMART ANK_2a 299 328 IPR002110 GO:0005515
Apr1g0647 354 SMART ANK_2a 266 295 IPR002110 GO:0005515
Apr1g0647 354 ProSiteProfiles Ankyrin repeat region circular profile. 266 298 - -
Apr1g0647 354 SUPERFAMILY Acyl-CoA binding protein 97 187 IPR035984 GO:0000062
Apr1g0647 354 Pfam Acyl CoA binding protein 99 179 IPR000582 GO:0000062
Apr1g0647 354 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 98 188 IPR000582 GO:0000062
Apr1g0647 354 SUPERFAMILY Ankyrin repeat 232 342 IPR036770 -
Apr1g0647 354 ProSiteProfiles Ankyrin repeat region circular profile. 299 331 - -
Apr1g0647 354 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 349 - -
Apr1g0647 354 Gene3D - 223 344 IPR036770 -
Apr1g0647 354 ProSiteProfiles Ankyrin repeat profile. 266 298 IPR002110 GO:0005515
Apr1g0647 354 MobiDBLite consensus disorder prediction 65 88 - -
Apr1g0647 354 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 349 - -
Apr1g0647 354 Pfam Ankyrin repeats (3 copies) 239 330 IPR002110 GO:0005515
Apr1g0647 354 PRINTS Acyl-coA-binding protein signature 121 139 IPR000582 GO:0000062
Apr1g0647 354 PRINTS Acyl-coA-binding protein signature 144 159 IPR000582 GO:0000062
Apr1g0647 354 PRINTS Acyl-coA-binding protein signature 165 182 IPR000582 GO:0000062
Apr1g0647 354 PRINTS Ankyrin repeat signature 267 282 IPR002110 GO:0005515
Apr1g0647 354 PRINTS Ankyrin repeat signature 315 329 IPR002110 GO:0005515
Apr1g0647 354 ProSiteProfiles Ankyrin repeat profile. 299 331 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0647 Apr-Chr1 7780971 7786988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0647 1 354 Acyl Lipid Metabolism Gene Families AT5G53470 62.147 2.46e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0647 - - gmx:100802051 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0647 1 7780971 7786988 Apr1g0647 1 7780971 7786988 ECH