Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0275 ATGGGTGAGTGGCAGTCACTTATCCAATCCATTTTTCTTGGTCTCATTTTCTCTTTCCTCCTGGCTAAGCTCATATCCATCGTCGTATCATTCAAGGACGATAATCTGACTATAACTCGCCGCAGTATTAGTAGTACCGACCATGTAAATAATCGGCGCAAAATAGAACCCGATGCCAGACCGTTTGTCCACAGGTCTGATGCCGATGAAGCCGAGCACCACGAGATTGAATCGGTCATGGCGGAGCACGGCAGCGTGAGAAATGAAAGTGTGGACGGTGATGACGACAATGACGATGATTGGGAGGGGGTGGAAAGTACAGAATTGGACGAGGCCTTCAGTGCTGCAACGGCTTTCGTGGCCGCTGCCGCTGCGGATCGCTTCTCGCAGAAGGTGTCCAGTGATGTGCAGCTCCAGCTATATGGGCTGTACAAAATTGCAACCGAAGGGCCCTGTAGCACGCCACAGCCTTCGGCACTGAAAATGACGGCTCGAGCCAAATGGCAAGCATGGCAGAAATTGGGTGCCATGCCTCCTGAAGATGCAATGCAGAAGTATATTGATATTGTGACAGAGCTTTACCCAACCTGGTTAGATGGTGCGGCTTTGAGGAGCAAAAGTGGAGATGGTATTGGTCCAAGTTCAGGGTCTTCAGAGTCTAAGGGACCAATGGGGCCTGTATTCAGCACTTTTGTGTATGAAGAGGAAGCTGGCAGTGATTTAAAAATTGATGCAATTCATGGATTTGCCAGAGAGGGAGACTCCACTAATCTGCTCAATTGTATTGAAGATGGTGTTTCAGTGAATCTGAAGGACAGTGAGGGTCGGACACCATTACATTGGGCTGTGGATCGTGGTCACCTTGAGGTCACAGAACTGCTTGTTTGTAGGAATGCTGATGTAAATGCCAAGGATAATGATGGGCAAACTCCATTGCATTATGCTGTTGTCTGTGAAAGAGAAGCCATAGCGGAGTGTTTAGTGAAGCACAATGCAGACCCAGATTTGAAGGACGATGATGGCAGCTCGTCACGTGACATCTGCAAGTTAAACTGGCCTTGCATGCAACCTGTGGGGAAGTAA 1083 0.4866 MGEWQSLIQSIFLGLIFSFLLAKLISIVVSFKDDNLTITRRSISSTDHVNNRRKIEPDARPFVHRSDADEAEHHEIESVMAEHGSVRNESVDGDDDNDDDWEGVESTELDEAFSAATAFVAAAAADRFSQKVSSDVQLQLYGLYKIATEGPCSTPQPSALKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWLDGAALRSKSGDGIGPSSGSSESKGPMGPVFSTFVYEEEAGSDLKIDAIHGFAREGDSTNLLNCIEDGVSVNLKDSEGRTPLHWAVDRGHLEVTELLVCRNADVNAKDNDGQTPLHYAVVCEREAIAECLVKHNADPDLKDDDGSSSRDICKLNWPCMQPVGK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0275 360 Pfam Ankyrin repeats (3 copies) 250 338 IPR002110 GO:0005515
Prci15g0275 360 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 109 199 IPR000582 GO:0000062
Prci15g0275 360 ProSiteProfiles Ankyrin repeat profile. 274 306 IPR002110 GO:0005515
Prci15g0275 360 SMART ANK_2a 274 303 IPR002110 GO:0005515
Prci15g0275 360 SMART ANK_2a 307 336 IPR002110 GO:0005515
Prci15g0275 360 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Prci15g0275 360 MobiDBLite consensus disorder prediction 80 100 - -
Prci15g0275 360 Gene3D - 234 351 IPR036770 -
Prci15g0275 360 Pfam Acyl CoA binding protein 110 190 IPR000582 GO:0000062
Prci15g0275 360 PRINTS Acyl-coA-binding protein signature 155 170 IPR000582 GO:0000062
Prci15g0275 360 PRINTS Acyl-coA-binding protein signature 132 150 IPR000582 GO:0000062
Prci15g0275 360 PRINTS Acyl-coA-binding protein signature 176 193 IPR000582 GO:0000062
Prci15g0275 360 SUPERFAMILY Acyl-CoA binding protein 108 198 IPR035984 GO:0000062
Prci15g0275 360 Gene3D - 103 213 IPR014352 -
Prci15g0275 360 ProSiteProfiles Ankyrin repeat region circular profile. 307 339 - -
Prci15g0275 360 SUPERFAMILY Ankyrin repeat 244 350 IPR036770 -
Prci15g0275 360 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 352 - -
Prci15g0275 360 ProSiteProfiles Ankyrin repeat region circular profile. 274 306 - -
Prci15g0275 360 PRINTS Ankyrin repeat signature 323 337 IPR002110 GO:0005515
Prci15g0275 360 PRINTS Ankyrin repeat signature 275 290 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0275 Prci-Chr15 1834219 1838778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0275 1 356 Acyl Lipid Metabolism Gene Families AT5G53470 61.517 8.41e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0275 - - gmx:100802051 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0275 15 1834219 1838778 Prci15g0275 15 1834219 1838778 ECH