Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01327 ATGGCCGAGTGGCACTCTCTTCTCCAGTCGATTCTCGTCGGCCTCATTTTCTCTTACCTTCTCGCCAAGCTCATCTCCATCGTCGTTTCCTTCAAAGACGACAACCTCACCGTCACGCGCGCCGCCGCTGCCACCGCCGCCTCTCGCGCGGAACCCGAGGCCGCCAAACTTGACGACGCCGTTCCTGATTCCTCGGCCGCGCTCCCCCTCGAGGAGCAGTCCGTGGTGGCCGAGCACGGTAGCGTGAGGAATGATAGTGACGGCGACTATGACGATGATGATTGGGAAGGCGTGGAGAGCACCGAATTGGACGAGGCATTCAGCGCCGCGACGGCGTTCGTGGCCGCCGCCGCCGCCGATCGGCTCTCGCAGAAGGTGTCGAGCGACGTGCAGCTCCAGCTTTACGGGTTGTACAAGATTGCCACCGAAGGTCCCTGCAGCACGCCCCAACCTTCGCCCCTCAAAATGACCGCACGTGCTAAATGGCAAGCATGGCAGAAATTGGGCGCTATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAACTATATCCTACTTGGCTTGATGGTTCATCCTTGAGGAGTAGAAGTGGCGATGGTAATGGCTCTGGTGCAGAGGCTAAGGGACCAATGGGACCAGTTTTCAGTACTTTTGTTTATGAAGAAGAATACGGCAGTGACTCGCAAATGGAAGCAATTCATGGATTTGCTAGGGAAGGAGATATGGCTAATCTGCTCAAGTGTATTGAAAATGGTGTTTCGGTTAATTTAAAGGACAGTGAGGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGTTGCTTGTGGGCAAGAATGCTGATGTGAATGCCAAGGATAATGATGGACAAACTGCCTTGCATTACGCTGTTACGTGTGAGAGAGAAGGCATAGCTGAGTATTTAGTGAAGCATAATGCAGATATAAATTCAAAAGATAATGATGGGAGTACACCGCGAGACATCTGTGAGCCAAACTGGCCATGTTTGCAGCACGTGGGGGAAGTAAACTGA 1062 0.5292 MAEWHSLLQSILVGLIFSYLLAKLISIVVSFKDDNLTVTRAAAATAASRAEPEAAKLDDAVPDSSAALPLEEQSVVAEHGSVRNDSDGDYDDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSSDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWLDGSSLRSRSGDGNGSGAEAKGPMGPVFSTFVYEEEYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGKNADVNAKDNDGQTALHYAVTCEREGIAEYLVKHNADINSKDNDGSTPRDICEPNWPCLQHVGEVN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01327 353 Gene3D - 97 206 IPR014352 -
Lapu9g01327 353 Pfam Ankyrin repeats (3 copies) 238 329 IPR002110 GO:0005515
Lapu9g01327 353 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 3 343 - -
Lapu9g01327 353 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 103 193 IPR000582 GO:0000062
Lapu9g01327 353 SUPERFAMILY Acyl-CoA binding protein 102 192 IPR035984 GO:0000062
Lapu9g01327 353 PRINTS Ankyrin repeat signature 266 281 IPR002110 GO:0005515
Lapu9g01327 353 PRINTS Ankyrin repeat signature 314 328 IPR002110 GO:0005515
Lapu9g01327 353 ProSiteProfiles Ankyrin repeat profile. 298 330 IPR002110 GO:0005515
Lapu9g01327 353 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Lapu9g01327 353 ProSiteProfiles Ankyrin repeat region circular profile. 265 297 - -
Lapu9g01327 353 Gene3D - 224 342 IPR036770 -
Lapu9g01327 353 PRINTS Acyl-coA-binding protein signature 149 164 IPR000582 GO:0000062
Lapu9g01327 353 PRINTS Acyl-coA-binding protein signature 170 187 IPR000582 GO:0000062
Lapu9g01327 353 PRINTS Acyl-coA-binding protein signature 126 144 IPR000582 GO:0000062
Lapu9g01327 353 SMART ANK_2a 298 327 IPR002110 GO:0005515
Lapu9g01327 353 SMART ANK_2a 232 261 IPR002110 GO:0005515
Lapu9g01327 353 SMART ANK_2a 265 294 IPR002110 GO:0005515
Lapu9g01327 353 ProSiteProfiles Ankyrin repeat region circular profile. 298 330 - -
Lapu9g01327 353 Pfam Acyl CoA binding protein 104 184 IPR000582 GO:0000062
Lapu9g01327 353 SUPERFAMILY Ankyrin repeat 231 339 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01327 Lapu-Chr9 27405908 27412977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01327 1 353 Acyl Lipid Metabolism Gene Families AT5G53470 63.842 9.09e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01327 - - gmx:100816670 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01327 9 27405908 27412977 Lapu9g01327 9 27405908 27412977 ECH