Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02106 ATGGCCGAGTGGCAGTCTCTCCTCCAGTCGATTATTGTCGGCCTCATTTTCTCTTACCTTCTCGCCAAGCTCATCTCCATCGTCGTTTCATTCAAAGACGACAACCTCACCGTTACGCGCGCTGCCACTACCACCGCCGCCGCCGACCGCGTGGAATCCGAGGCTGCCAAACGCGAAGACGTCGTTCCAGATTTCGCGGCCTCGCTCAGGTTAGAGGAGCAGTCCGTGGTGGCCGAGCACGGTAGCGTGAGGAATGATAGTGACGGCGACTACGACGATGATGATTGGGAAGGTGTGGAGAGCACCGAATTGGACGAGGCATTCAGCGCAGCGACGGCGTTTGTGGCCGCCGCCGCCGCCGATCGACTCTCGCAGAAGGTGTCGAGCGACTTGCAGCTCCAGCTTTACGGGTTGTACAAGATTGCCACCGAAGGTCCCTGCAGCACGCCCCAACCTTCGCCCCTCAAAATGACCGCACGTGCTAAATGGCAAGCATGGCAGAAATTGGGCGCGATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAACTGTATCCTGCTTGGCTTGATGGTTCATCTTTGAGAAGTAGAAGTGGCGATGGTGCTGGCTCTGGTTCAGAGGCTAAGGGACCAATGGGGCCAGTTTTCAGTACTTTTGTTTATGAAGAAGAATATGGCAGCGACTCGCAAATGGAAGCCATTCATGGGTTTGCCAGGGAAGGAGATATGGCTAACCTGCTCAAGTGTATTGAAAATGGTGTTTCAGTTAATTTAAAAGACAGTGAGGGTCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGTTGCTTCTGAGCAAGAATGCTGATGTGAATGCCAAGTTAATGATACTAATGTCTCTTCCACTTTCTGTTGATATTATGTTTTCTTTTTTGAAGGATAATGATGGACAAACTGCCTTGCATTACGCTGTTACGTGTGAGAGAGAAGGCATAGCTGAGTATTTAGTGAAGCATAAAGCAGACATAAATTCAAAAGATAATGATGGGAATTCACCGCGAGACATCTGTGAGCCAAGCTGGCCATGTTTGCAGCACGTGGGGAAGTAA 1116 0.5063 MAEWQSLLQSIIVGLIFSYLLAKLISIVVSFKDDNLTVTRAATTTAAADRVESEAAKREDVVPDFAASLRLEEQSVVAEHGSVRNDSDGDYDDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSSDLQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPAWLDGSSLRSRSGDGAGSGSEAKGPMGPVFSTFVYEEEYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLLSKNADVNAKLMILMSLPLSVDIMFSFLKDNDGQTALHYAVTCEREGIAEYLVKHKADINSKDNDGNSPRDICEPSWPCLQHVGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02106 371 ProSiteProfiles Ankyrin repeat profile. 266 298 IPR002110 GO:0005515
Vimu10g02106 371 SUPERFAMILY Acyl-CoA binding protein 103 193 IPR035984 GO:0000062
Vimu10g02106 371 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 104 194 IPR000582 GO:0000062
Vimu10g02106 371 ProSiteProfiles Ankyrin repeat region circular profile. 266 296 - -
Vimu10g02106 371 Pfam Ankyrin repeats (3 copies) 231 296 IPR002110 GO:0005515
Vimu10g02106 371 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
Vimu10g02106 371 Pfam Ankyrin repeats (many copies) 315 359 IPR002110 GO:0005515
Vimu10g02106 371 Gene3D - 225 362 IPR036770 -
Vimu10g02106 371 SUPERFAMILY Ankyrin repeat 232 359 IPR036770 -
Vimu10g02106 371 SMART ANK_2a 233 262 IPR002110 GO:0005515
Vimu10g02106 371 SMART ANK_2a 318 347 IPR002110 GO:0005515
Vimu10g02106 371 SMART ANK_2a 266 295 IPR002110 GO:0005515
Vimu10g02106 371 PRINTS Ankyrin repeat signature 267 282 IPR002110 GO:0005515
Vimu10g02106 371 PRINTS Ankyrin repeat signature 334 348 IPR002110 GO:0005515
Vimu10g02106 371 ProSiteProfiles Ankyrin repeat region circular profile. 318 350 - -
Vimu10g02106 371 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 361 - -
Vimu10g02106 371 Pfam Acyl CoA binding protein 105 185 IPR000582 GO:0000062
Vimu10g02106 371 PRINTS Acyl-coA-binding protein signature 150 165 IPR000582 GO:0000062
Vimu10g02106 371 PRINTS Acyl-coA-binding protein signature 127 145 IPR000582 GO:0000062
Vimu10g02106 371 PRINTS Acyl-coA-binding protein signature 171 188 IPR000582 GO:0000062
Vimu10g02106 371 Gene3D - 98 207 IPR014352 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02106 1 367 Acyl Lipid Metabolism Gene Families AT5G53470 62.772 5.74e-146 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02106 - - gmx:100816670 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02106 10 30967099 30973550 Vimu10g02106 10 30967099 30973550 ECH