Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1320 ATGGAAACCGCCATCGCTGCTGTTCTTCTCCTTGCATCCGTCTTCTTCCAAGGGGTGGTGGAAGGAAACATCGGAGTTAACTATGGGACGGTGGCTAACGACCTGCCTCCGCCATCTGAGGTGGCGCGTTTCCTTCTGGAATCCACGACTATCAACCGCGTGAGGATGTTTGATGCTGACCCGGAAATGATTCAAGCCTTTGCTCACACTGGAATTGCCGTCACAGTCACTGTTCCTAACGAGCTAATCCCGCGGCTCACCAAGCTGAGCTTTGCCCAACAATGGGTGAAAACCAATGTCCAGCCGTACGTCCCGGCGACGAATTTAATCAGAATTCTGGTGGGCAATGAGGTGTTGTCGACGGCCAATAAATTGCTCATCGCTGGCCTTGTCCCGGCGATGCAGACCCTCCACACAGCCCTTGCGGCGGTGTCCCTGGACAGAAGGATCAAGGTCTCGACCCCTCATTCTTTGGGTATCCTCTCAACGTCAAGCCCTCCGTCGACGGGGAGGTTCCGACAGGGCTACGACGTCCATGTCATCAAGCCACTGCTGAGCTTCCTGAGAGCCACCAACTCACCTTTCATGATAAACCCCTATCCCTTCTTCGGTTACTCGGCTGAAACTCTAGATTACGCGCTGTTCAGGCCTAATTCTGGGGTGTTGGATGAAAACACACAAAGGGTTTACACAAACATGCTGGATGCGCAGCTAGATGCCGTCTTCTCGGCCATGAAGATCCTCGGTTTTACCGATGTAGAGATCGTTATAGCCGAGACCGGCTGGCCCTCGGACGGGGACGAAGGGCAAGTTGGGGTGAACGCCGAGAGCGCGGCGGAGTATAACGGGAACCTCAGGGAGCATGTCATGTCCGGCGTCGGGACACCGCTCATGCCGAACCGGACGTTTGAGACGTACATTTTCGCGCTGTTCAACGAGAACCTCAAGCCCGGGCCGCTGTGTGAGAGGAACTTTGGGCTGTTCCAGCCGGACTTGACTCCGGTCTACGACATCGGGATCATGAGGCCAACGGCTAGAGCTTCCATTCCTTGGAACCCAGCTCCGGCGGCAGCTCCTCAGCTGGGTCCAGCCCCACAGCAACATCCCAAGGGCGGAAAACAATGGTGTCTCCCCACATCTGACGCCCACTCCGACGCCCTGCAGAAGAACATCGACTATGTATGTGGGCTAGGACTGGACTGCAAGCCCATCCAAGAAGGCGGAGCGTGCTTCATTCCTGACACGGTTCGAGCCCATGCGGCCTATGCCATGAATGCATACTACCAAACAACAGGAGGGAGCGAGTATGACTGTGATTTTGAGCAGACCGGAGCCCTCACTGACGTCGATCCAAGCTATGGAAGATGCAAATACTTGGGACGGTGA 1386 0.557 METAIAAVLLLASVFFQGVVEGNIGVNYGTVANDLPPPSEVARFLLESTTINRVRMFDADPEMIQAFAHTGIAVTVTVPNELIPRLTKLSFAQQWVKTNVQPYVPATNLIRILVGNEVLSTANKLLIAGLVPAMQTLHTALAAVSLDRRIKVSTPHSLGILSTSSPPSTGRFRQGYDVHVIKPLLSFLRATNSPFMINPYPFFGYSAETLDYALFRPNSGVLDENTQRVYTNMLDAQLDAVFSAMKILGFTDVEIVIAETGWPSDGDEGQVGVNAESAAEYNGNLREHVMSGVGTPLMPNRTFETYIFALFNENLKPGPLCERNFGLFQPDLTPVYDIGIMRPTARASIPWNPAPAAAPQLGPAPQQHPKGGKQWCLPTSDAHSDALQKNIDYVCGLGLDCKPIQEGGACFIPDTVRAHAAYAMNAYYQTTGGSEYDCDFEQTGALTDVDPSYGRCKYLGR* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1320 461 ProSitePatterns Glycosyl hydrolases family 17 signature. 253 266 IPR000490 GO:0004553|GO:0005975
Vvi16g1320 461 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 445 IPR044965 GO:0004553|GO:0005975
Vvi16g1320 461 Gene3D - 372 459 - -
Vvi16g1320 461 SMART X8_cls 374 458 IPR012946 -
Vvi16g1320 461 Pfam X8 domain 374 444 IPR012946 -
Vvi16g1320 461 SUPERFAMILY (Trans)glycosidases 24 339 IPR017853 -
Vvi16g1320 461 Gene3D Glycosidases 23 345 - -
Vvi16g1320 461 FunFam Glucan endo-1,3-beta-glucosidase 3 23 343 - -
Vvi16g1320 461 FunFam glucan endo-1,3-beta-glucosidase 7 370 459 - -
Vvi16g1320 461 Pfam Glycosyl hydrolases family 17 24 338 IPR000490 GO:0004553|GO:0005975
Vvi16g1320 461 MobiDBLite consensus disorder prediction 351 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1320 Vvi-Chr16 21731310 21733180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1320 24 458 Miscellaneous Gene Families AT2G16230 48.636 1.13e-147 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1320 - - vvi:104882241 923.694