Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02788 ATGGGTGAGTGGCATGATTGGCAATCTCTTCTTCAATCCATTTTCCTCGGTCTCATTTTCTCTTACTTCCTCGCTAAGCTCATATCCATCGTCGTTTCATTCAACAACGAAAACCTAACAATCACCCGCAACACCAACCCTACCACCACCGCTGATGATGCTTCCAAACACGACGACATCGTTTCCGATACGGGACACCGTATCGAAGCTGAACGTGAGTCGGTTATGGCCGAACAAGGTAGCGTCAGAAACGAAAGCGTTGACGGTGGCGATGATGACTATGATGATGACGATTGGGAAGGTGTCGAGAGTACTGAATTGGATGAAGCTTTCAGCGCCGCTACTGCTTTTGTTGCCGCCGCCGCTGCCGATCGGTTATCTCAGAAGGTTTCTAATGATATTCAGCTTCAGCTTTATGGACTGTATAAAATTGCAACCGAAGGTCCGTGTAGCACGCCTCAGCCTTCTCCCCTCAAAATGACGGCTCGTTCCAAATGGCAAGCGTGGCAGAAATTGGGTGCTATGCCACCTGAAGATGCAATGCAGAAGTACATTGACATTGTGTCCGAGCTATATCCTACTTGGCTTGATGGTGCACCTTTGAGAAGCAGAACTGGCGATAGTGGGGGCCCTAGTTCAGACGCTCGGGGACCAATGGGACCAGTATTCAGCTCTTTTGTTTATGAAGAAGAATGCAGCACTGACTCGAAAATGGATGCCATTCACGGATTTGCTAGAGAGGGAGATGTGACTAACCTACTCAAGTGTGTTGAAAATGGCGTTTCAGTGAATTTGAAGGACAGTGAAGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTGACGTGACAGAGCTACTGCTCGGTAGGAATGCCGATGTAAATGCCAAGGATAATGATGGACAAACTCCACTGCACTATGCAGTAACATGCGAGAGAGAAGCCATAGCTGAATATTTAGTGAAACATAGCGCAGACATCAATTCAAAAGACAACGATGGCAGTTCTTCGCGTGACATCTGTAGTTCCAAGTGGCCGTTTATGCAGCATGAGGGAGAAGCAAAATGA 1074 0.4804 MGEWHDWQSLLQSIFLGLIFSYFLAKLISIVVSFNNENLTITRNTNPTTTADDASKHDDIVSDTGHRIEAERESVMAEQGSVRNESVDGGDDDYDDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDIQLQLYGLYKIATEGPCSTPQPSPLKMTARSKWQAWQKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSRTGDSGGPSSDARGPMGPVFSSFVYEEECSTDSKMDAIHGFAREGDVTNLLKCVENGVSVNLKDSEGRTPLHWAVDRGHLDVTELLLGRNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADINSKDNDGSSSRDICSSKWPFMQHEGEAK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02788 357 ProSiteProfiles Ankyrin repeat region circular profile. 269 301 - -
Vivi3g02788 357 SMART ANK_2a 236 265 IPR002110 GO:0005515
Vivi3g02788 357 SMART ANK_2a 269 298 IPR002110 GO:0005515
Vivi3g02788 357 SMART ANK_2a 302 331 IPR002110 GO:0005515
Vivi3g02788 357 SUPERFAMILY Acyl-CoA binding protein 106 196 IPR035984 GO:0000062
Vivi3g02788 357 ProSiteProfiles Ankyrin repeat profile. 302 334 IPR002110 GO:0005515
Vivi3g02788 357 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Vivi3g02788 357 PRINTS Acyl-coA-binding protein signature 174 191 IPR000582 GO:0000062
Vivi3g02788 357 PRINTS Acyl-coA-binding protein signature 153 168 IPR000582 GO:0000062
Vivi3g02788 357 PRINTS Acyl-coA-binding protein signature 130 148 IPR000582 GO:0000062
Vivi3g02788 357 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 6 347 - -
Vivi3g02788 357 PRINTS Ankyrin repeat signature 318 332 IPR002110 GO:0005515
Vivi3g02788 357 PRINTS Ankyrin repeat signature 270 285 IPR002110 GO:0005515
Vivi3g02788 357 Gene3D - 227 347 IPR036770 -
Vivi3g02788 357 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 107 197 IPR000582 GO:0000062
Vivi3g02788 357 SUPERFAMILY Ankyrin repeat 233 343 IPR036770 -
Vivi3g02788 357 Gene3D - 101 213 IPR014352 -
Vivi3g02788 357 Pfam Ankyrin repeats (3 copies) 242 333 IPR002110 GO:0005515
Vivi3g02788 357 MobiDBLite consensus disorder prediction 72 93 - -
Vivi3g02788 357 ProSiteProfiles Ankyrin repeat region circular profile. 302 334 - -
Vivi3g02788 357 MobiDBLite consensus disorder prediction 329 357 - -
Vivi3g02788 357 Pfam Acyl CoA binding protein 108 188 IPR000582 GO:0000062
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02788 Vivi-Chr3 46733688 46738732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02788 6 353 Acyl Lipid Metabolism Gene Families AT5G53470 63.897 2.19e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02788 - - psat:127081845 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02788 3 46733688 46738732 Vivi3g02788 3 46733688 46738732 ECH