Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1327 ATGCGAACCCACAATTTCCACACGAGCCACACCTTAACGCAACAAACTCATAACTGCAGCCGTCCAACAGTTTGGCGTTTCCTCCACCGCCAACCACAACTTCCTGAGTCCAGCTCTACATTCGCGTCTTCTTCTCTTTTTCTCTCTCTTCACTTTCTCTCTCCTAGGGTTTCTCAGCGCCGTTTTGCTCTCTTCACGATCCGTGACTGCAGCATAGCCGTGGTTCCCAGGTATAATATGGCAATGGAAGTCACTCAAGTGCTTTTGAATGCACAATCAGTCGATGGAAACATTCGGAAACATGCAGAAGAGAGTTTAAAACAGTTCCAGGACCAAAATCTTCCAAGTTTCCTGCTATCTCTTTCTGGAGAACTAGCTAATGATGAAAAGCCTGTTGATAGCCGTAAATTAGCAGGCTTGATTCTTAAGAATGCATTGGATGCCAAGGAGCAACATAGGAAATTTGAGCTTGTCCAAAGATGGTTGTCTTTGGATGCTGCTGTAAAGACCCAGATCAAGACCTGCTTGTTGCAGACCCTCTCATCTCCTGTCCCTGATGCCCGGTCAACTGCTTCACAAGTAATTGCGAAGATCGCAGGCATTGAGCTGCCTCAGAAACAGTGGCCTGAGCTGATTGGGTCACTGTTGTCAAATATTCACCAGCTTCCAGCTCATGTTAAGCAAGCCACGTTAGAGACTCTTGGGTATTTGTGTGAGGAAGTCTCCCCAGATGTTGTTGACCAAGATCAAGTAAATAAAATACTCACAGCCGTTGTTCAGGGTATGAATTCATCTGAAGGGAACAATGATGTTAGGCTTGCTGCTACCCGTGCACTGTATAATGCTCTTGGCTTTGCTCAGGCAAACTTTACCAATGATATGGAGCGTGATTATATCATGAGAGTTGTCTGTGAAGCAACACTGTCTCCTGAAGTCAAGATTCGGCAGGCTGCTTTTGAGTGCTTGGTTTCTATTTCTTCGACTTATTATGAGAAATTGGCTCCTTACATCCAGGACATCTTTAACATCACAGCAAAGGCTGTTAGGGAAGATGAGGAACCTGTTGCTCTTCAAGCCATTGAGTTCTGGAGCTCTATCTGTGATGAGGAGATAGATATCCTAGAAGAATACGGGGGCGATTTCTCTGGTGATTCAGATATTCCTTGCTTCTATTTTATCAAACAAGCACTTCCAGCTCTTGTCCCTATGTTGTTGGAGACTCTTCTCAAACAAGAGGAGGATCAGGATCAGGATGAAGGGGCTTGGAATCTTGCAATGGCTGGTGGAACATGCCTAGGTTTGGTTGCTCGAACAGTTGGAGATGATATTGTCCCACTTGTTATGCCATTCATTGAAGAGAACATTACAAAACCAGATTGGAGGCAGAGAGAGGCAGCCACATATGCATTTGGTTCCATCTTAGAGGGTCCTTCCCCCGACAAGCTGGCTCCCATTGTTAATGTTGCTTTGAATTTCATGCTTAGTGCCTTAACAAAGGACCCAAATAATCATGTTAAGGACACAACAGCTTGGACTCTTGGACGAATATTTGAATTTCTTCATGGTTCAACAATGGAGACACCTATAATTACTCATGCAAACTGTCAGCAGATTATCACAGTTCTGCTTCTGAGCATGAAGGATGTTCCAAATGTTGCTGAGAAGGCTTGTGGTGCTCTCTATTTTCTTGCCCAAGGGTATGAGGATGTGGGTTCAGCATCTCCCCTAACTCCATTTTTCCAGGAAATTGTTCAATCCCTTCTCACTGTCACCCACAGAAAAGATGCTGGAGAGTCACGATTAAGGACTTCTGCATACGAAACATTGAATGAAGTGGTGAGATGTTCAACTGATGAAACAGCTCCCATGGTGCTGCAACTTGTTCCTGTCATTATGATGGAACTTCATCAGACACTTGAGGCTCAGAAGCTTTCATCTGATGAAAGAGAAAAGCAAAATGAATTACAAGGCCTGCTCTGTGGGTGCTTGCAGGTTATCATTCAGAAGCTAGGATCATCAGAGCCAACTAAATATGTCTTCATGCAGTATGCAGACCAGATAATGGGTCTCTTCTTGAGGGTTTTTGCTTGTAGAAGTGCCACTGTGCATGAGGAGGCGATGCTTGCTATTGGGGCACTTGCCTATGCAACAGGGCCAGATTTTGCAAAATACATGCCTGAGTTTTATAAGTATTTGGAAATGGGTCTTCAAAATTTTGAGGAGTACCAAGTTTGTGCTGTCACCGTCGGTGTAGTCGGGGATATATGTAGGGCATTGGAGGATAAGATCCTGCCTTACTGTGATGGGATTATGACATTGCTACTAAAGGACTTGTCAAGCAACCAGTTGCACAGATCTGTGAAGCCCCCCATCTTCTCGTGCTTTGGTGACATAGCATTGGCAATAGGCGAGAATTTTGAGAAATACTTGATGTATGCAATGCCCATGCTCCAGAGTGCTGCAGAGTTATCGTCTCACACGGCAGGTGCTGATGATGAAATGACAGAGTACACCAATCTTCTGAGAAATGGGATATTGGAGGCATATTCTGGCATCTTTCAAGGCTTTAAGAACTCTCCAAAAACTCAGCTTTTGATTCCTTATGCACCTCACATTCTCCAGTTTCTAGATAGCATATACATGGAGAAAGACATGGATGATGTGGTGATGAAGACTGCCATTGGAGTTCTTGGGGATCTAGCGGACACACTGGGCAGCAATGCAGGTTCTTTGATTCAGCAATCTCTGTCAAGCAAAGACTTTTTAAATGAATGCTTGTCCTCAGAAGACCATTTGATTAAGGAATCTGCCGAGTGGGCCAAGCTGGCCATTAGTCGTGCCATTTCTGTTTGA 2853 0.4441 MRTHNFHTSHTLTQQTHNCSRPTVWRFLHRQPQLPESSSTFASSSLFLSLHFLSPRVSQRRFALFTIRDCSIAVVPRYNMAMEVTQVLLNAQSVDGNIRKHAEESLKQFQDQNLPSFLLSLSGELANDEKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDAAVKTQIKTCLLQTLSSPVPDARSTASQVIAKIAGIELPQKQWPELIGSLLSNIHQLPAHVKQATLETLGYLCEEVSPDVVDQDQVNKILTAVVQGMNSSEGNNDVRLAATRALYNALGFAQANFTNDMERDYIMRVVCEATLSPEVKIRQAAFECLVSISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGGDFSGDSDIPCFYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNLAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLAPIVNVALNFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTMETPIITHANCQQIITVLLLSMKDVPNVAEKACGALYFLAQGYEDVGSASPLTPFFQEIVQSLLTVTHRKDAGESRLRTSAYETLNEVVRCSTDETAPMVLQLVPVIMMELHQTLEAQKLSSDEREKQNELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYATGPDFAKYMPEFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEDKILPYCDGIMTLLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSSHTAGADDEMTEYTNLLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSIYMEKDMDDVVMKTAIGVLGDLADTLGSNAGSLIQQSLSSKDFLNECLSSEDHLIKESAEWAKLAISRAISV* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1327 950 FunFam Importin subunit beta-1 82 950 - -
Vvi16g1327 950 Pfam Importin-beta N-terminal domain 102 181 IPR001494 GO:0006886|GO:0031267
Vvi16g1327 950 PANTHER IMPORTIN BETA 85 925 IPR040122 GO:0006606
Vvi16g1327 950 SMART IBN_N_2 102 182 IPR001494 GO:0006886|GO:0031267
Vvi16g1327 950 Gene3D - 76 950 IPR011989 -
Vvi16g1327 950 ProSiteProfiles Importin-beta N-terminal domain profile. 102 182 IPR001494 GO:0006886|GO:0031267
Vvi16g1327 950 Pfam HEAT-like repeat 460 516 - -
Vvi16g1327 950 SUPERFAMILY ARM repeat 82 940 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1327 Vvi-Chr16 21758099 21762464 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1327 K14293 - vvi:100265913 1716.44