Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01430 ATGGCCGAGTGGCAATCCCTCCTCCAATCGATTTTCGTCGGCCTCATTTTCTCTTACCTTCTCGCCAAGCTCATCTCCATCGTCGTTTCCTTCAAAGACGACAACCTCACCGTCACGCGCGCCGCCGCCGCCGAAACCGCCACCACCACCACCGCGCGCGAGGAACCGCCCGAGGGTGCTCCCAAGCGCGACGACGCCGTTTCCTCCGATGCGCGACCCTTCGAGGAGGAGTCGATGGTGGCCGAGCACGGCAGCGTGAGGAACGACAGCGACGGCGACGGCGACTACGACGACGATTGGGAGGGCGTGGAGAGCACCGAACTGGACGAGGCGTTCAGCGCCGCGACGGCGTTCGTGGCCGCCGCCGCCTCCGATCGGCTCTCGCAGAAGGTGTCGAGCGACGTGCAGCTCCAGCTTTACGGGTTGTACAAGATTGCCACCGAAGGTCCCTGCAGCACGCCCCAACCTTCGCCCCTCAAAATTACCGCACGTGCCAAATGGCAAGCGTGGCTGAAATTGGGTGCTATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAGATATATCCTACTTGGCTTGATGGTTCATCTTTGAGGAATAAAAGTGGCGATGGTGGTGGCTCTGGTTCAGAGGCCAAGGGACCAATGGGACCAGTGTTCAGCACTTTTGTTTATGAAGAGGAATATGGCAGTGACTCGCAAATGGAAGCCATTCATGGATTTGCCAGGGAAGGAGATATGGCTAATCTGCTCAAGTGTATTGAAAATGGCGTTTCAGTGAATTTAAAGGACAGTGAGGGCCGGACACCATTACACTGGGCTGTGGATCGTGGCCACCTTAATGTCACAGAGTTACTTGTTGGGAGGAATGCTGATGTGAATGCCAAGGATAATGATGGACAAACTCCCTTGCATTACGCTGTTACTTGTGAGAGAGAAGCCATAGCTGAGTATTTAGTGAAGCATAATGCAGACATATCCTCAAAAGATAATGATGGGAGTTCACCGCGTGACATCTGTGAGTCAAACTGGCCATGCTTGCAGCATGTGGGGGAAGTTAATTGA 1077 0.5422 MAEWQSLLQSIFVGLIFSYLLAKLISIVVSFKDDNLTVTRAAAAETATTTTAREEPPEGAPKRDDAVSSDARPFEEESMVAEHGSVRNDSDGDGDYDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSSDVQLQLYGLYKIATEGPCSTPQPSPLKITARAKWQAWLKLGAMPPEDAMQKYIDIVTEIYPTWLDGSSLRNKSGDGGGSGSEAKGPMGPVFSTFVYEEEYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGRNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHNADISSKDNDGSSPRDICESNWPCLQHVGEVN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01430 358 MobiDBLite consensus disorder prediction 44 94 - -
Pumo10g01430 358 SUPERFAMILY Acyl-CoA binding protein 107 197 IPR035984 GO:0000062
Pumo10g01430 358 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Pumo10g01430 358 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 108 198 IPR000582 GO:0000062
Pumo10g01430 358 Pfam Ankyrin repeats (3 copies) 243 334 IPR002110 GO:0005515
Pumo10g01430 358 Gene3D - 229 348 IPR036770 -
Pumo10g01430 358 ProSiteProfiles Ankyrin repeat region circular profile. 303 335 - -
Pumo10g01430 358 PRINTS Ankyrin repeat signature 271 286 IPR002110 GO:0005515
Pumo10g01430 358 PRINTS Ankyrin repeat signature 319 333 IPR002110 GO:0005515
Pumo10g01430 358 ProSiteProfiles Ankyrin repeat region circular profile. 270 302 - -
Pumo10g01430 358 MobiDBLite consensus disorder prediction 56 91 - -
Pumo10g01430 358 ProSiteProfiles Ankyrin repeat profile. 303 335 IPR002110 GO:0005515
Pumo10g01430 358 Pfam Acyl CoA binding protein 109 189 IPR000582 GO:0000062
Pumo10g01430 358 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 349 - -
Pumo10g01430 358 Gene3D - 102 212 IPR014352 -
Pumo10g01430 358 SUPERFAMILY Ankyrin repeat 236 346 IPR036770 -
Pumo10g01430 358 PRINTS Acyl-coA-binding protein signature 131 149 IPR000582 GO:0000062
Pumo10g01430 358 PRINTS Acyl-coA-binding protein signature 154 169 IPR000582 GO:0000062
Pumo10g01430 358 PRINTS Acyl-coA-binding protein signature 175 192 IPR000582 GO:0000062
Pumo10g01430 358 SMART ANK_2a 270 299 IPR002110 GO:0005515
Pumo10g01430 358 SMART ANK_2a 303 332 IPR002110 GO:0005515
Pumo10g01430 358 SMART ANK_2a 237 266 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01430 Pumo-Chr10 19082723 19087980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01430 1 358 Acyl Lipid Metabolism Gene Families AT5G53470 62.396 2.52e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01430 - - gmx:100816670 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01430 10 19082723 19087980 Pumo10g01430 10 19082723 19087980 ECH