Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02619 ATGGTTGAGTGGCAGTCCCTTTTGCAATCCATTTTCGTTGGTCTCATTTTCTCTTACCTTCTTGCAAAGCTCATTTCCATCGTCGTTTCCTTCAAAGACGACAATCTCACCATTACACGTACCACCACCACCAACACCAACACCACCACCGCCACCGCCACAGAAACCGATGCCAAACACGACGCTGCCGTGCCCGATGCTGCCCACCGCTTCGAGGCTGAGTCGGTCATGGCCGAGCAGGGTAGCGTCAGGAACGAGAGCATCGACGGTGGCGATGATGACTATGACGACGACGATTGGGAAGGGGTGGAAGCCACCGAATTAGACGAGGCCTTCAGTGCCGCCACGGCTTTCGTCGCTTCCGCCGCCGCTGATCGCCTTTCGCAGAAAGTCTCCACCGATGTGCAGCTCCAGCTTTACGGGTTGTACAAGATTGCCACCGAAGGTCCCTGTAACACGCCCCAACCTTCGGCCCTCAAAATGACGGCACGAGCCAAATGGCAAGCGTGGCAGAAACTGGGTGCTATGCCTCCTGAAGATGCAATGCAGAAGTACATTGATATTGTGACTGAGCTATATCCTTCTTGGCTTGATGGTTCATCTTTGAGGAGCAAAAGTGGCGATGGTGGTGGCGCTAGTTCAGAGGCCAGGGGAACAATGGGACCAGTATTCAGCACTTTTGTTTATGAAGAGGAATATGGCAGTGACGCGAAAATGGATGCCATTCATGGATTTGCTAGAGAAGGGGATATGGATAATCTGTTCAAGTGTATCGAAAATGGTGTTTCGGTTAATTTGAAGGGTAAGTTATTTTTAGCTGTTTGCTTTTCAAAATGTATACATTATTCACAAAACATGCATTTTGAAATGCATGCAGACAGTGAGGGCCGGACACCATTGCACTGGGCTGTGGATCGTGGCCACCTTGATGTCACAGAGCTGCTCATTGGCAGGAATGCTGATGTAAATCCCAAGGATAATGATGGACAAACTCCATTGCATTACGCTGTCATGTGTGAGAGAGAGGCCATAGCTGAGTATTTAGTGAAGCATAATGCAGACGTAGATTCAAAGGATAATGATGGGAGTTCCCCGCGTGACCTCTGTAAGTCAAACTGGCCGTGCATGCAGCATGTGGGGGAAGTAAATTGA 1152 0.4974 MVEWQSLLQSIFVGLIFSYLLAKLISIVVSFKDDNLTITRTTTTNTNTTTATATETDAKHDAAVPDAAHRFEAESVMAEQGSVRNESIDGGDDDYDDDDWEGVEATELDEAFSAATAFVASAAADRLSQKVSTDVQLQLYGLYKIATEGPCNTPQPSALKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPSWLDGSSLRSKSGDGGGASSEARGTMGPVFSTFVYEEEYGSDAKMDAIHGFAREGDMDNLFKCIENGVSVNLKGKLFLAVCFSKCIHYSQNMHFEMHADSEGRTPLHWAVDRGHLDVTELLIGRNADVNPKDNDGQTPLHYAVMCEREAIAEYLVKHNADVDSKDNDGSSPRDLCKSNWPCMQHVGEVN. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02619 383 Gene3D - 233 332 IPR036770 -
Seca4g02619 383 SMART ANK_2a 328 357 IPR002110 GO:0005515
Seca4g02619 383 SMART ANK_2a 237 266 IPR002110 GO:0005515
Seca4g02619 383 SMART ANK_2a 295 324 IPR002110 GO:0005515
Seca4g02619 383 PRINTS Acyl-coA-binding protein signature 175 192 IPR000582 GO:0000062
Seca4g02619 383 PRINTS Acyl-coA-binding protein signature 131 149 IPR000582 GO:0000062
Seca4g02619 383 PRINTS Acyl-coA-binding protein signature 154 169 IPR000582 GO:0000062
Seca4g02619 383 Pfam Acyl CoA binding protein 109 189 IPR000582 GO:0000062
Seca4g02619 383 ProSiteProfiles Ankyrin repeat profile. 328 360 IPR002110 GO:0005515
Seca4g02619 383 ProSiteProfiles Ankyrin repeat profile. 295 327 IPR002110 GO:0005515
Seca4g02619 383 Gene3D - 333 378 IPR036770 -
Seca4g02619 383 PRINTS Ankyrin repeat signature 344 358 IPR002110 GO:0005515
Seca4g02619 383 PRINTS Ankyrin repeat signature 296 311 IPR002110 GO:0005515
Seca4g02619 383 SUPERFAMILY Acyl-CoA binding protein 107 197 IPR035984 GO:0000062
Seca4g02619 383 MobiDBLite consensus disorder prediction 75 94 - -
Seca4g02619 383 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 108 198 IPR000582 GO:0000062
Seca4g02619 383 Pfam Ankyrin repeats (3 copies) 287 359 IPR002110 GO:0005515
Seca4g02619 383 Gene3D - 102 212 IPR014352 -
Seca4g02619 383 ProSiteProfiles Ankyrin repeat region circular profile. 328 360 - -
Seca4g02619 383 SUPERFAMILY Ankyrin repeat 237 371 IPR036770 -
Seca4g02619 383 ProSiteProfiles Ankyrin repeat region circular profile. 295 327 - -
Seca4g02619 383 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02619 Seca-Chr4 44897624 44902985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02619 1 383 Acyl Lipid Metabolism Gene Families AT5G53470 59.008 6.56e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02619 - - gmx:100802051 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02619 4 44897624 44902985 Seca4g02619 4 44897624 44902985 ECH