Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3558 ATGGAGAAGAAAACGCCTCTTATATCCTTGGATTCAACATTACACGCAACTTTGCTACTCCTTGCATTAGTTTTCATCCAAGAGGTGCAAGGAATTGGTGTTAATTATGGCACAATAGCAGATAACCTTCCTCCACCAGCTGAAGTAGCAAAATTCCTYTCAAAATCCACCATCATTAAYCGGGTGAGACTCTTCGATGCCAACCCCGAACTCCTACGCGCTTTTAAGGACACAAGAATCGAGGTCACAATAACCGTCCCTAACAACCAAATCCCACGTGTAACTAACTTAACCGTTGCACGTGAATGGGTCCAAACCAACGTCCAACCGTTCATCCCTTCAACTAAATTAGTTAGAATKCTYGTTGGCAACGAAGTGTTRTCCACTGCCAACAAACTTYTAATTAGCAACTTAGTCCCTGCAATGCAAACACTCCACGTGGCACTTGTTGAGCTCTCAATAGASAGCCACATAAAAGTTACCACACCACACTCTCTGGGCATTTTGGTAAATTCAACTACACCTTCCGGTGCGAGATTTAGGCAAGGCTATGATACTCATGTGATTAAACCAATGCTTAGTTTTCTTAGAGATTCGAATTCACCATTCATGGTTAACCCTTACCCATTCTTTGGATTTTCCGTTGATACCCTTGATTATGCACTTTTYTTACCCAATTCTGGCATGGTTGATGACGTCACTCAKCTACGTTACACCAACATGTTGGATGCACAACTTGATTCTGTTTATTCTGCCATGAAGGTTTTGGGATTCGAAGATGTTGAGATTGTGATCGGTGAAACGGGCTGGCCCACTAAGGGAGACCCGGCCCAAATTGGTGTGGATCCAATGAGTGCTTCGGAGTACAATGGGAATCTCATACGTCATGTCACTTCCGGGGTTGGAACTCCTCTCATGCCTAACCGGACTTTTGAGACTTATATTTTTGCTTTGTTTGATGAGAACTTGAAACCCGGCCCAACATGCGAAAGGAATTTTGGGCTTTTCTGGCCCAATATGACTCCTGTCTATGACATTCAKATAATGAGGAACACTGCCATTGGGGTTGCTCATTATCGTCATAAATCACKTTTAATAATCATGGTTATTTTAAGCTTCATTGGAACAATAAGAGCATTATCTACAGACTACAGCATTGATATGGAAGCCATAGCAGAATTGGATATTTTGGATGCAGAGACACCAAAAAAACAGACACTGTTGGTGGTAGCAAAATGTTCCTGA 1245 0.4201 MEKKTPLISLDSTLHATLLLLALVFIQEVQGIGVNYGTIADNLPPPAEVAKFLSKSTIINRVRLFDANPELLRAFKDTRIEVTITVPNNQIPRVTNLTVAREWVQTNVQPFIPSTKLVRXLVGNEVLSTANKLLISNLVPAMQTLHVALVELSIXSHIKVTTPHSLGILVNSTTPSGARFRQGYDTHVIKPMLSFLRDSNSPFMVNPYPFFGFSVDTLDYALFLPNSGMVDDVTXLRYTNMLDAQLDSVYSAMKVLGFEDVEIVIGETGWPTKGDPAQIGVDPMSASEYNGNLIRHVTSGVGTPLMPNRTFETYIFALFDENLKPGPTCERNFGLFWPNMTPVYDIXIMRNTAIGVAHYRHKSXLIIMVILSFIGTIRALSTDYSIDMEAIAELDILDAETPKKQTLLVVAKCS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3558 414 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 22 354 IPR044965 GO:0004553|GO:0005975
Amo16g3558 414 Pfam Glycosyl hydrolases family 17 32 346 IPR000490 GO:0004553|GO:0005975
Amo16g3558 414 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Amo16g3558 414 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 22 354 - -
Amo16g3558 414 Gene3D Glycosidases 30 354 - -
Amo16g3558 414 SUPERFAMILY (Trans)glycosidases 32 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3558 Amo-Chr16 145686950 145689079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3558 14 354 Miscellaneous Gene Families AT3G46570 53.488 7.62e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3558 - - ccaj:109788601 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3558 16 145686950 145689079 Amo16g3558 16 145686950 145689079 ECH