Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01928 ATGGCTGAGTGGCACTCACTCCTCCAATCCATTTTCCTTGgcctcattttctctttcctcatTGCAAAGCTCATCTCCGTTGTCGTCTCATTCAAGGACGATAATCTCAGTATTACTCGTAGCGGCAACGTCCATAGAGTCAATCAGAGCCCTAAAGAAGCCGAGTCCAAATTCACCAACACTGTCGCTGGTAAGCGCCCGTTTGGGCCCACGTCTGGTTCCGATGTTGGCGAAATCATCGAGGCCGACTCGGTGATTGCCGAGCTGGGCAGTGTAAGAAATGAAAGTGTGGATGGTGATAATGACTATGATGACGATTGGGAAGGGGTGGAAAGTACGGAATTGGACGAAACCTTCAGTGCTGCCACGGCTTTCgtggctgctgctgctgccgATCGGCTTTCCCAGAAGGTGTCCAGTGATGTGCAGCTGCAACTTTATGGGTTGTACAAGATTGCCACGGAAGGACCGTGTAGTACGCCACCGCCGTCGGCACTGAAAATGACGGCTCGAGCCAAATGGCAAGCATGGCAGAAATTGGGTGCTATGCCTCCTGAAGATGCAATGCAAAAGTACATAGAAATTGTGACACAGTTATATCCTACTTGGGCTGATGGCTCGGCTTTGAAGAGGAAAGGTGGGGACAGTGGTGGCTCAAGTTCAGAGGCTAAGGGACCAATGGGACCAGTGTTCAGCACTTTTGTGTATGAAGAGGAATCGAGCAAGGATTTGAAAATTGATGCTGTCCATGGATTTGCCAGAGAAGGAGATGTGGCTAATCTGCTCAAGAGTATTGAAAATGGTGTTTCAGTGAATTTGAAGGGATTGTTTATAAACAAAGACAGTGAGGGTCGGACACCCTTACATTGGGCTGTAGATCGTGGTCACCTTAATGTCACAGAATTGCTTGTTAGCAAGAACGCCAACGTTGATGCCCAGGATAATGATGGACAAACTCCGTTGCATTACGCTGCTGTTTGTGGGAGAGAAACCATAGCTGAGTATCTGGTGAAGCATAAAGCGGACACGGGCATAAAGGATAATGATGGCAATACCCCTCGTGACGTCTGTGAGTCAAACTGGTCATGGATGCAACCTGGGGCTGTGGGGGAAGCAAGTTG 1121 0.4701 MAEWHSLLQSIFLGLIFSFLIAKLISVVVSFKDDNLSITRSGNVHRVNQSPKEAESKFTNTVAGKRPFGPTSGSDVGEIIEADSVIAELGSVRNESVDGDNDYDDDWEGVESTELDETFSAATAFVAAAAADRLSQKVSSDVQLQLYGLYKIATEGPCSTPPPSALKMTARAKWQAWQKLGAMPPEDAMQKYIEIVTQLYPTWADGSALKRKGGDSGGSSSEAKGPMGPVFSTFVYEEESSKDLKIDAVHGFAREGDVANLLKSIENGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVSKNANVDAQDNDGQTPLHYAAVCGRETIAEYLVKHKADTGIKDNDGNTPRDVCESNWSWMQPGAVGEAS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01928 367 ProSiteProfiles Ankyrin repeat profile. 310 342 IPR002110 GO:0005515
Bva12g01928 367 Pfam Acyl CoA binding protein 116 196 IPR000582 GO:0000062
Bva12g01928 367 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 115 205 IPR000582 GO:0000062
Bva12g01928 367 Gene3D - 231 356 IPR036770 -
Bva12g01928 367 PRINTS Ankyrin repeat signature 278 293 IPR002110 GO:0005515
Bva12g01928 367 PRINTS Ankyrin repeat signature 326 340 IPR002110 GO:0005515
Bva12g01928 367 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 360 - -
Bva12g01928 367 Pfam Ankyrin repeats (3 copies) 252 341 IPR002110 GO:0005515
Bva12g01928 367 SUPERFAMILY Acyl-CoA binding protein 114 204 IPR035984 GO:0000062
Bva12g01928 367 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 360 - -
Bva12g01928 367 PRINTS Acyl-coA-binding protein signature 182 199 IPR000582 GO:0000062
Bva12g01928 367 PRINTS Acyl-coA-binding protein signature 138 156 IPR000582 GO:0000062
Bva12g01928 367 PRINTS Acyl-coA-binding protein signature 161 176 IPR000582 GO:0000062
Bva12g01928 367 ProSiteProfiles Ankyrin repeat region circular profile. 277 309 - -
Bva12g01928 367 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515
Bva12g01928 367 SMART ANK_2a 277 306 IPR002110 GO:0005515
Bva12g01928 367 SMART ANK_2a 310 339 IPR002110 GO:0005515
Bva12g01928 367 Gene3D - 109 221 IPR014352 -
Bva12g01928 367 ProSiteProfiles Ankyrin repeat region circular profile. 310 342 - -
Bva12g01928 367 SUPERFAMILY Ankyrin repeat 247 353 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01928 Bva-Chr12 15375190 15379893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01928 1 359 Acyl Lipid Metabolism Gene Families AT5G53470 63.510 1.10e-151 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01928 - - gmx:100816670 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01928 12 15375190 15379893 Bva12g01928 12 15375190 15379893 ECH